Scomber japonicus (chub mackerel): 128382827
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Entry
128382827 CDS
T09718
Symbol
smchd1
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sjo03036
]
128382827 (smchd1)
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128382827 (smchd1)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
128382827 (smchd1)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
128382827 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
HATPase_c
Duc1
Motif
Other DBs
NCBI-GeneID:
128382827
NCBI-ProteinID:
XP_053198801
LinkDB
All DBs
Position
21:4476977..4528964
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AA seq
1525 aa
AA seq
DB search
MEVGVVVVVEEEVVVVVEEDGSGGDGRGGGRWWWWRKMGVMEVGVVVVVGMVGMIVVVEM
VGVVEEEGGRWECREMVEVMEEFFIQPHETFVVSTTDRAVLDYDTFAALEDGCTLYLFRQ
EGQALPAAREETITFQPHYDTLIQSGTYEYYASNDKNSLPYALAELIDNSLSATAKNPGV
RTIEIRMLFDETLGKPAVIVLDNGRGMTSKQLNNWAVYRLSKFLRDDGKSASNDEKYIRP
DHVPRSLNSDISYFGVGGKQAIFYIGNSVRMITKPVGSPDVHEMVMSKEDFEEKERNNED
IYKGTIKNRKPGDSSHVKKSGESFLRDLIAEESGKQSFTAVVMTGVLPDHVTFLKQDFSV
WTRELAHIYHYYIHGVNGNDLKRNSTNSNQSSKIDIQVTLREKPNKLPRVMNLREVEDDM
QTLYINATADTFEFHISTVGSGRVEGLIRYHPFLYDRETYPEEPHTMLAPVDDESDDNES
GDVQQARGKRPVFECFWNGRLIPYTTVPEFEWCARPKGSSKLPPECYSRFSGVLFTNDTY
KVSTNKLTFMDLELKLKSNESIFTRVVNGQKQRVNIKSEFTKWLQNCHDKLDKQTEFLRF
KETITRPDVPTKKMQFPWATFSSIEFGGKKYQTGQLVKSQKTQPIFNGTVIRFLLFGNHD
RDVFATGGDVEVTLEPKELYDTTRIIPISKIDKNATVEAIKENIEKDRARLPELLRVDWP
QGVPWPQKAVRPAGSSLGPIKVEILNKNGESISRMPSVSQGTVRKLGIELKLNQHENLRS
LGRYSLCLNTVINEGKESKATVFGGKPLPSFQLSFTITAGNAESFTVGAVRTSLQVGVPF
DIPLEIRDGYDHPTKPPQDLRPELKCSGLELSYEAVDCSEKTFTIRGVKAKGKVQNYQQS
KVPSLPAVNADCSSTGAGQLVTKPINLLIIKGEPQQLKVKFDLLGWKNVSPVERELTVLP
STRVSRMELCCQNEENLVLKNKEKIEWLAGGVLENLFYKLYDEAGREVSLTAEIAATIKV
NWTDDVNLKDLVRGKLPDIQVPTQVQLKKTSAAPTNFYQVSYNKQDVSASFTITPRPDEP
TRLKATLPQNTMRLGETLPGNINLELVDQYDNVTKTLTSACVKDFSVEAEGLDKSAVTFT
WQGSSGSVVLTGVRFQSGTLGSREIIFSYKSYVERVIVEATAGVPTQFKLISGPEMPLQV
LNDQGIPTAFVIQLCDEWGNPSPDQRVVVELRPSPPALKVRTSVTSQPVNAEGKASFIVE
SVSGPKGYYQLEFVASFNKRPINSPAVNLTVIPNPNKPVRLSVEYDTSATFTAGGVFPVF
SVTVVSDEGSPITTFNPAAASMFLWMGTPSGGTPPLTVPELKPSKPRVNEKKDRFHFRDK
EIPVKAGEYVLQFSLLVETENVLYSDQITINVGAHEPVKLGPDVEPPSPVVSYTKDIANR
TLVENMTLRITDLYGNTAGQDLEGKVVVSIKSPDGDMNNRSLPLFEGKTNKFQFSLRKGK
IHIPVSHHDIYSTHHHTAVHQACQT
NT seq
4578 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgggagtggtagtagtggtggaggaggaggtggtagtagtggtggaggaagat
gggagtggaggtgatggacgaggtggaggaaggtggtggtggtggaggaagatgggagta
atggaggtgggagtggtagtagtggtgggaatggtgggaatgatagtggttgtggaaatg
gtgggagtggtggaggaggagggaggaaggtgggagtgcagggaaatggtggaggtgatg
gaggagtttttcatccagccacatgaaacatttgtggtgtcaacgacagacagagccgtc
ctggattatgacacatttgctgccctcgaggacggctgcaccctctacttgtttcggcag
gagggtcaagctctgccggcggcccgggaggagaccatcacgttccagcctcattacgat
acgctgatccagagcggcacgtacgagtactacgctagcaatgacaagaactcattacct
tatgcgctcgctgagttgattgacaattctctgtcagccacagctaaaaacccgggtgtg
aggacaatagagatccgaatgctgtttgatgaaactctcggtaaacctgcagtgatcgtg
ttagataacgggcgcgggatgacttctaagcagctcaataactgggcagtttacagactc
tctaaatttctcagggacgacggcaaatctgcaagcaatgacgagaagtacatacggccc
gatcatgtccctcgtagtctcaacagtgacatatcctactttggagttggaggaaaacag
gctattttctacatcggaaactcagtcaggatgatcaccaagcccgtcggctccccagat
gttcatgagatggtgatgtctaaagaggactttgaggagaaggagaggaacaacgaggac
atctacaaagggacgatcaagaacaggaagcccggtgattcttcacatgtgaaaaagagt
ggggagagtttcctccgtgatctcatcgccgaggagtctgggaaacagagtttcaccgcc
gtcgtcatgacgggagttctgcccgatcacgtgacttttctcaaacaggacttcagcgtt
tggacccgagagctcgctcacatatatcattattacattcatggagtcaatggaaacgac
ctgaaaagaaactccaccaactcgaatcaatcctctaaaattgacattcaggtgactctg
cgggagaagcccaacaagttgcctcgtgtgatgaacctccgggaagtcgaggacgacatg
cagactctgtacatcaacgccaccgcagacacgttcgagtttcacatctcgaccgtcggc
agcggcagagtggagggactcattcggtatcaccctttcctctacgacagggagacttac
cccgaagagccacacactatgctcgcgcccgttgatgacgagagtgacgataacgagtcc
ggagacgtgcagcaagcgagagggaagagacccgtgtttgaatgtttctggaacggacga
cttattccttacaccaccgtccctgagtttgagtggtgcgctcggcccaaaggaagctcc
aagctgcctcccgagtgttacagccgcttctcgggcgtgctcttcaccaacgacacgtat
aaggtcagcaccaacaagctcaccttcatggacctggagctgaaactgaagagcaatgaa
tccatcttcacacgtgttgtgaacggacagaaacaaagagttaacattaagtctgagttt
accaagtggctccaaaactgtcacgataagctggacaagcaaaccgagttcctgcgcttc
aaggaaacaataacacgaccagacgttcctacgaagaaaatgcagttcccctgggcgact
ttctcctccatcgaatttggcggcaaaaaataccaaacaggccaacttgtgaagtctcag
aaaactcagcccatttttaatgggacggtgattcggtttttgctgtttggaaatcacgac
agagatgtctttgccacaggaggagacgttgaagtgacgctagaacccaaagagctttac
gacacaaccaggatcatacccatatccaagatcgacaagaacgccactgttgaggccatc
aaggaaaacatcgagaaggatcgcgccagactcccagagttgctgagagtggactggcct
caaggcgtcccttggccccagaaggctgtgcgtccagctgggtcttcgttaggaccgatc
aaagttgagatcctgaacaagaacggagagtcgatatccaggatgccgtcagtgagtcag
ggaacggtgagaaagctgggcatcgagctcaaactaaaccaacacgagaatctgagaagc
ctggggaggtacagcttgtgtctgaacacggtgataaacgaggggaaggagagtaaagct
acggtcttcggaggcaaaccgctcccaagcttccagctcagcttcaccatcacagcgggt
aacgctgagagcttcacggttggagcagtgagaacctctctgcaggtcggagtcccgttc
gacattcctctggagataagagacggctatgaccacccaacgaagcctcctcaggacctc
agacctgaactcaaatgcagtggcctggagctgagttacgaggcggtggactgcagtgag
aagacattcaccatcagaggcgtcaaagcaaaaggaaaagtccagaattaccaacaatca
aaggtgccgtctctcccagcagtgaacgctgactgcagcagcactggagctggacagctt
gtcacaaagcccataaatctcttaattatcaaaggagaaccacaacaactcaaagtcaaa
tttgacctgctgggttggaagaatgtatcgccggtggagagagagctgaccgtgctgccg
agcaccagagtgtcccggatggagctgtgctgccagaatgaagagaatctggtcttgaag
aataaggaaaagattgaatggttggctggaggcgtgctggagaacctgttctacaaactg
tacgatgaagctggcagagaagtctcgctcactgctgaaatagccgccacgatcaaggtt
aactggacagacgatgtaaaccttaaagatctggttcgggggaagctgccggatatacag
gttcctactcaggtgcagctgaagaagacttctgctgcacctaccaacttctaccaagtt
tcctacaacaaacaggatgtgtcagcctcctttactattacgcctcgtccagatgaacca
acccggctaaaagcaacgttgcctcaaaacacgatgaggctgggagaaactctccctgga
aacatcaaccttgagcttgtggatcagtacgataatgtaacgaagacgctgacctccgcc
tgcgtgaaggatttctctgtggaggctgaaggtctggacaagtcagccgtcaccttcaca
tggcaggggagcagcggttctgtcgtattgacgggggttcggttccagtctgggaccctc
ggctccagagaaatcatcttcagctataagagctacgtggagcgagtcatcgtggaggcg
acggccggagttcctacgcagtttaaactcatcagtggaccagagatgcctttgcaggtg
ttgaacgaccaaggcatccccacagcgttcgtcatccagctgtgtgacgagtggggaaac
ccctccccagaccagagagtcgtggtggagttacggccttcacctccagcgctgaaggtg
cggacatctgtaacttcacaacctgtgaacgcagagggaaaagcttctttcattgttgag
agtgtgagcggaccaaaggggtactatcagctggagtttgtagcttccttcaacaagagg
cccatcaatagtcctgcagtgaatctcaccgtcatcccaaaccccaacaaacctgtcagg
ctgtcagtggagtacgacaccagcgctacgttcactgctggaggcgtcttccctgttttc
tctgtgaccgttgtgtctgatgaaggaagcccgattacgacttttaaccccgccgctgcg
tccatgttcctgtggatgggaacgccatcaggaggaacgcctccactaacggttcctgaa
ctgaaaccgagtaaaccgagagtgaatgaaaagaaggaccgttttcacttcagagataaa
gagatcccagttaaagctggagaatacgtcctccagttttctctgcttgttgaaacagaa
aacgtcctgtacagtgatcagatcactataaacgtcggggcccatgaaccggtcaaactg
ggaccagacgttgagcctccctctccagttgtttcctacactaaggacattgccaaccga
accttggtggagaacatgactctgaggataacggatttatacggaaacacagcggggcag
gatctagaggggaaagtggtggtttctataaagagtcctgatggcgacatgaacaacaga
agtctccctttgtttgagggcaaaaccaacaagtttcaattctccctgaggaaaggaaag
atccacatccctgtgagtcaccatgacatctacagcacgcatcatcatactgctgtacac
caggcgtgtcaaacatga
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integrated database retrieval system
