KEGG   PATHWAY: slal03050
Entry
slal03050                   Pathway                                
Name
Proteasome - Seriola lalandi dorsalis (Yellowtail amberjack)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
slal03050  Proteasome
slal03050

Other DBs
GO: 0000502
Organism
Seriola lalandi dorsalis (Yellowtail amberjack) [GN:slal]
Gene
111644199  [KO:K06691]
111644263  psmf1; proteasome inhibitor PI31 subunit [KO:K06700]
111645741  psme2; proteasome activator complex subunit 2 [KO:K06697]
111645770  [KO:K02729] [EC:3.4.25.1]
111647358  psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
111648129  psmb7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
111648219  psme1; proteasome activator complex subunit 1 [KO:K06696]
111648224  pomp; proteasome maturation protein [KO:K11599]
111649052  [KO:K02738] [EC:3.4.25.1]
111649112  psma3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
111650327  psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
111650473  [KO:K02728] [EC:3.4.25.1]
111650919  [KO:K03029]
111651040  [KO:K03033]
111651416  psmd1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
111651653  [KO:K02728] [EC:3.4.25.1]
111652254  psmc5; 26S proteasome regulatory subunit 8 [KO:K03066]
111652569  psmd14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
111654243  [KO:K02730] [EC:3.4.25.1]
111654348  [KO:K02725] [EC:3.4.25.1]
111655225  [KO:K06699]
111655320  [KO:K06693]
111655443  [KO:K03036]
111656106  psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
111656183  psme3; proteasome activator complex subunit 3 [KO:K06698]
111656650  psmd13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
111657440  psmc4; 26S proteasome regulatory subunit 6B isoform X1 [KO:K03063]
111657638  [KO:K03029]
111658125  psma2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
111658226  psmd9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
111659029  psme4; proteasome activator complex subunit 4 isoform X1 [KO:K06699]
111659612  [KO:K02739] [EC:3.4.25.1]
111659713  psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
111660407  psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
111661206  psmb8; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
111661207  [KO:K02739] [EC:3.4.25.1]
111661208  [KO:K02738] [EC:3.4.25.1]
111661209  [KO:K02741] [EC:3.4.25.1]
111661938  [KO:K06691]
111662257  psmd8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
111662504  [KO:K03036]
111663331  [KO:K03037]
111665408  psmc2; 26S proteasome regulatory subunit 7 [KO:K03061]
111666440  [KO:K11599]
111666510  [KO:K11598] [EC:3.4.25.1]
111666521  [KO:K02737] [EC:3.4.25.1]
111667661  psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
111667914  psmc6; 26S proteasome regulatory subunit 10B [KO:K03064]
111668818  psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
111668837  psmc3; 26S proteasome regulatory subunit 6A [KO:K03065]
111670507  psma8; proteasome subunit alpha type-7-like [KO:K02731] [EC:3.4.25.1]
111670888  psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
111671263  psmd7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
111671286  psmd2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
111671681  [KO:K11598] [EC:3.4.25.1]
111671886  psmb2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
111672506  [KO:K02730] [EC:3.4.25.1]
111672690  psmc1; 26S proteasome regulatory subunit 4 [KO:K03062]
111673715  [KO:K02730] [EC:3.4.25.1]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
slal04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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