KEGG   PATHWAY: slal04120
Entry
slal04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Seriola lalandi dorsalis (Yellowtail amberjack)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
slal04120  Ubiquitin mediated proteolysis
slal04120

Other DBs
GO: 0016567
Organism
Seriola lalandi dorsalis (Yellowtail amberjack) [GN:slal]
Gene
111644323  traf6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
111644511  [KO:K20217] [EC:2.3.2.23]
111644512  [KO:K20217] [EC:2.3.2.23]
111644882  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
111644962  [KO:K06689] [EC:2.3.2.23]
111645114  ubox5; RING finger protein 37 isoform X1 [KO:K10600] [EC:2.3.2.27]
111645115  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
111645120  fbxo4; F-box only protein 4 [KO:K10291]
111645306  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
111645827  [KO:K02927]
111646186  [KO:K08285] [EC:2.3.2.27]
111646262  nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
111646327  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
111646356  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
111646366  [KO:K10577]
111646372  [KO:K09561] [EC:2.3.2.27]
111646416  xiap; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
111646486  [KO:K06689] [EC:2.3.2.23]
111646499  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
111646646  fbxw11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
111646647  [KO:K04649] [EC:2.3.2.23]
111646673  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
111647272  cul1; cullin-1 isoform X1 [KO:K03347]
111647510  socs1; suppressor of cytokine signaling 1 [KO:K04694]
111647571  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
111647651  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
111647686  [KO:K05630] [EC:2.3.2.26]
111647870  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
111648016  [KO:K10575] [EC:2.3.2.23]
111648021  ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
111648027  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
111648033  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
111648076  skp2; S-phase kinase-associated protein 2 [KO:K03875]
111648232  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
111648239  cul4b; cullin-4B [KO:K10609]
111648637  [KO:K10608] [EC:2.3.2.27]
111648727  [KO:K03873]
111648910  [KO:K02977]
111649448  [KO:K06689] [EC:2.3.2.23]
111649938  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
111649980  rnf7; RING-box protein 2 [KO:K10611]
111649997  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
111650176  [KO:K03364]
111650933  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
111651170  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
111651575  [KO:K07868]
111651622  [KO:K04707] [EC:2.3.2.27]
111651791  [KO:K16061]
111652111  [KO:K10447]
111652268  [KO:K03873]
111652616  [KO:K03364]
111652625  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
111652725  nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
111652966  cop1; E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
111652993  [KO:K10575] [EC:2.3.2.23]
111653581  cul5; cullin-5 isoform X1 [KO:K10612]
111653849  cdc16; cell division cycle protein 16 homolog [KO:K03353]
111653975  cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
111654294  [KO:K02207] [EC:2.3.2.23]
111654419  cdc20; cell division cycle protein 20 homolog [KO:K03363]
111654433  aire; autoimmune regulator [KO:K10603]
111654442  [KO:K03869]
111654938  cdc20b; cell division cycle protein 20 homolog B isoform X1 [KO:K03363]
111654943  siah1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
111655022  [KO:K10686] [EC:6.2.1.64]
111655091  [KO:K05632] [EC:2.3.2.26]
111655255  [KO:K05632] [EC:2.3.2.26]
111655296  [KO:K03869]
111655307  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
111655333  ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
111655721  det1; DET1 homolog [KO:K10571]
111656069  prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
111656376  pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
111656539  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
111656944  [KO:K10587] [EC:2.3.2.26]
111657129  brca1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
111657272  [KO:K22518] [EC:2.3.2.27]
111657355  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
111657528  cdc27; cell division cycle protein 27 homolog [KO:K03350]
111657669  mdm2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
111657717  socs3; suppressor of cytokine signaling 3 [KO:K04696]
111657846  [KO:K03178] [EC:6.2.1.45]
111657949  [KO:K10612]
111658532  [KO:K10582] [EC:2.3.2.23]
111658708  [KO:K09561] [EC:2.3.2.27]
111658711  ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
111658745  [KO:K10614] [EC:2.3.2.26]
111658765  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
111658884  [KO:K02207] [EC:2.3.2.23]
111658947  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
111659135  [KO:K10582] [EC:2.3.2.23]
111659426  ddb1; DNA damage-binding protein 1 [KO:K10610]
111659714  [KO:K04678] [EC:2.3.2.26]
111659771  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
111659839  wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
111659848  cul2; cullin-2 [KO:K03870]
111659976  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
111659985  skp1; S-phase kinase-associated protein 1 [KO:K03094]
111660060  [KO:K20217] [EC:2.3.2.23]
111660078  [KO:K20217] [EC:2.3.2.23]
111660125  anapc4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
111660153  herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
111660209  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
111660369  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
111660402  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
111660553  mgrn1; E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
111660587  [KO:K03873]
111660976  ppil2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
111661153  [KO:K04706] [EC:2.3.2.-]
111661345  ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
111662129  [KO:K08285] [EC:2.3.2.27]
111662150  [KO:K10573] [EC:2.3.2.23]
111662840  eloc; elongin-C [KO:K03872]
111662942  ube2w; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
111663036  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
111663039  [KO:K10583] [EC:2.3.2.23]
111663094  [KO:K03869]
111663256  [KO:K04694]
111663611  [KO:K10580] [EC:2.3.2.23]
111663731  [KO:K06689] [EC:2.3.2.23]
111663901  ubc; polyubiquitin-C [KO:K08770]
111663939  rhobtb2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
111663967  ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
111664092  ube2k; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
111664190  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
111664399  [KO:K06689] [EC:2.3.2.23]
111664512  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
111664555  keap1; kelch-like ECH-associated protein 1 [KO:K10456]
111664718  ubb; polyubiquitin-B [KO:K04551]
111664746  nedd4l; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4-like [KO:K13305] [EC:2.3.2.26]
111664810  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
111665035  [KO:K03350]
111665170  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
111665602  [KO:K06689] [EC:2.3.2.23]
111665659  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
111666031  [KO:K04552] [EC:2.3.2.23]
111666109  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
111666169  [KO:K10608] [EC:2.3.2.27]
111666176  [KO:K16060]
111666235  cdc23; cell division cycle protein 23 homolog [KO:K03355]
111666251  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
111666989  [KO:K04706] [EC:2.3.2.-]
111666992  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
111667442  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
111667697  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
111667871  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
111668333  cul4a; cullin-4A [KO:K10609]
111668595  [KO:K10099]
111668894  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
111668988  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
111669559  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
111669757  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
111669823  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
111670121  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
111670163  [KO:K10456]
111670249  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
111670340  ube3a; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
111670545  [KO:K03364]
111670661  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
111670662  huwe1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
111670887  [KO:K10686] [EC:6.2.1.64]
111671010  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
111671125  [KO:K02927]
111671188  [KO:K10614] [EC:2.3.2.26]
111671260  [KO:K10576] [EC:2.3.2.23]
111671488  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
111671844  [KO:K10608] [EC:2.3.2.27]
111672825  [KO:K06689] [EC:2.3.2.23]
111672964  birc6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
111673191  [KO:K10260]
111673192  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
111673508  [KO:K04696]
111673792  [KO:K04678] [EC:2.3.2.26]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
slal03050  Proteasome
KO pathway
ko04120   

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