KEGG   PATHWAY: sluc04136
Entry
sluc04136                   Pathway                                
Name
Autophagy - other - Sander lucioperca (pikeperch)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
sluc04136  Autophagy - other
sluc04136

Other DBs
GO: 0006914
Organism
Sander lucioperca (pikeperch) [GN:sluc]
Gene
116035541  [KO:K17906]
116039163  atg4c; cysteine protease ATG4C isoform X1 [KO:K08342] [EC:3.4.22.-]
116039645  rptor; regulatory-associated protein of mTOR isoform X1 [KO:K07204]
116040255  gabarapl2; gamma-aminobutyric acid receptor-associated protein-like 2 isoform X1 [KO:K08341]
116040301  ulk2; serine/threonine-protein kinase ULK2 [KO:K08269] [EC:2.7.11.1]
116040432  atg4da; cysteine protease ATG4D [KO:K08342] [EC:3.4.22.-]
116040665  mtor; serine/threonine-protein kinase mTOR isoform X1 [KO:K07203] [EC:2.7.11.1]
116043323  pik3c3; phosphatidylinositol 3-kinase catalytic subunit type 3 isoform X1 [KO:K00914] [EC:2.7.1.137]
116043961  atg10; ubiquitin-like-conjugating enzyme ATG10 [KO:K17888]
116044274  mlst8; target of rapamycin complex subunit lst8 [KO:K08266]
116044323  [KO:K17908]
116044724  atg13; autophagy-related protein 13 isoform X1 [KO:K08331]
116045101  wipi1; WD repeat domain phosphoinositide-interacting protein 1 isoform X1 [KO:K17908]
116045981  atg9b; autophagy-related protein 9B [KO:K17907]
116049056  gabarapa; GABA(A) receptor-associated protein a [KO:K08341]
116049096  atg5; autophagy protein 5 [KO:K08339]
116049677  zgc:92606; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
116049679  atg12; ubiquitin-like protein ATG12 [KO:K08336]
116051189  pik3r4; phosphoinositide 3-kinase regulatory subunit 4 isoform X2 [KO:K08333] [EC:2.7.11.1]
116051330  atg7; ubiquitin-like modifier-activating enzyme ATG7 [KO:K08337]
116051771  atg3; ubiquitin-like-conjugating enzyme ATG3 isoform X1 [KO:K08343]
116052365  atg2a; autophagy-related protein 2 homolog A isoform X1 [KO:K17906]
116056074  ppp2cab; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382] [EC:3.1.3.16]
116056640  [KO:K04382] [EC:3.1.3.16]
116057501  atg9a; autophagy-related protein 9A [KO:K17907]
116058077  atg101; autophagy-related protein 101 [KO:K19730]
116058404  atg16l1; autophagy-related protein 16-1 isoform X1 [KO:K17890]
116060302  igbp1; immunoglobulin-binding protein 1 [KO:K17606]
116061047  becn1; beclin-1 [KO:K08334]
116063287  atg4b; cysteine protease ATG4B isoform X1 [KO:K08342] [EC:3.4.22.-]
116064419  [KO:K04382] [EC:3.1.3.16]
116065265  wipi2; WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [KO:K17908]
116065487  [KO:K08342] [EC:3.4.22.-]
116067301  [KO:K08341]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   

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