Shewanella oncorhynchi: RA178_12410
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Entry
RA178_12410 CDS
T09381
Name
(GenBank) TolC family protein
KO
K12340
outer membrane protein
Organism
sog
Shewanella oncorhynchi
Pathway
sog01501
beta-Lactam resistance
sog01503
Cationic antimicrobial peptide (CAMP) resistance
sog02020
Two-component system
sog03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RA178_12410
09132 Signal transduction
02020 Two-component system
RA178_12410
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RA178_12410
01503 Cationic antimicrobial peptide (CAMP) resistance
RA178_12410
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sog02000
]
RA178_12410
02044 Secretion system [BR:
sog02044
]
RA178_12410
01504 Antimicrobial resistance genes [BR:
sog01504
]
RA178_12410
Transporters [BR:
sog02000
]
Other transporters
Pores ion channels [TC:
1
]
RA178_12410
Secretion system [BR:
sog02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
RA178_12410
RTX toxin transporter
RA178_12410
Multiple protein transporter
RA178_12410
RaxAB-RaxC type I secretion system protein
RA178_12410
Antimicrobial resistance genes [BR:
sog01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AcrEF-TolC [MD:
M00696
]
RA178_12410
Multidrug resistance, efflux pump MdtEF-TolC [MD:
M00697
]
RA178_12410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
WMB71243
UniProt:
A0AA50Q4R3
LinkDB
All DBs
Position
complement(2751546..2753087)
Genome browser
AA seq
513 aa
AA seq
DB search
MTDQHSQLSFAGSSILILASVLLLVGCASNAANMASSSPDRPWMPRSDEETRLWSLTRPE
QRTYTDDIQNFTVPANLERAKIVQNVKVDVDRSYGLAELIDLAQRTNPNTRAAWQRARQA
AMAVGMVEASYLPIITASVVAGSQTLSVPLPDNLENTNLDNTEKGTAQIISLQWLLFDFG
QRESLIKESKHVAIAANILFNGAHQEVIFEVSHAYYAYGAAMQRTVFAAKAFHNAEIIQT
AVEARAAQGLSTSMEAAQARQAVAQAELRRVQAAGDERVAYQNLLAAVGVNAELKVDAQR
VAQQALPAPYAPSLEASIQQALSRRPDVAASYAALQASKAGIEAAQAGYLPKVYLGGNIS
WGSGDFDVSGLPSIGQQGTGSGVLLGITVPIYDGGLRDALVRDAKSKSEMAADDFHRVQT
AAVTEIVVAYNALRTSLESYQAATALVAAVSTTYEAALAAYRNGVGTVDAVTSADLALLD
ARQVQGDAHTAALTSSVNLAFVVGSLTSHKYLP
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccaacattctcaactaagttttgcgggctcctctatcctcatattagcttcg
gtgctgttgttagttggttgtgcttctaatgcagctaatatggcttcctcatccccagac
cgaccttggatgccgcgcagcgatgaggagacccgtctatggagcttaactcgtcctgag
cagcgaacatatacggacgatattcagaactttactgttcctgcgaatcttgagcgcgca
aaaatcgtgcagaacgtgaaagttgatgtcgatcgaagctatggtcttgctgagctgatc
gatcttgcacaacgtacaaacccgaatactagagctgcatggcaacgtgccaggcaagca
gcgatggccgttggtatggtggaggcaagttatttgcccatcattaccgcgagtgtggtt
gcggggtctcaaacgttgtcagtaccattgccagataaccttgagaataccaatttagat
aacactgaaaagggaactgcgcaaatcatctcgcttcagtggctgttgtttgactttggt
cagcgagagtcgcttatcaaagagagtaaacatgtggcaattgctgcaaacattctgttc
aatggcgctcatcaagaggtgatctttgaagtctcccatgcctattatgcttatggagca
gcgatgcaacgaacagtttttgctgcgaaagcatttcataacgctgaaataattcagacc
gctgttgaagcgcgtgctgctcaagggctctcgaccagcatggaagcagctcaagcgcgt
caagctgtggctcaagccgaacttcgccgggttcaagccgctggtgatgagcgtgttgcc
taccagaatctcctcgctgctgtgggtgtgaatgctgaacttaaggttgatgctcagcgc
gtggcgcagcaggcgctacctgcaccatacgccccatctcttgaggcatctattcagcaa
gcgctttcacgacgtccagatgtagcggcaagctatgcagcgctacaggctagcaaggct
ggtattgaggctgctcaagccggttacttacctaaggtataccttggcggtaacattagt
tggggttctggtgactttgacgtgtccggcctaccttctattggccaacaggggacgggt
agtggtgtgcttttggggatcaccgtgccaatctatgatggtggattacgagacgcactt
gtcagagatgccaagtccaaatctgaaatggccgctgatgatttccatcgggtgcaaacc
gcagcagttaccgaaattgtagtggcatacaatgcattaaggacctcgctggaatcgtat
caagcagccactgcacttgtcgctgccgtttcaacaacctatgaagccgccttggcagct
tatcgtaatggtgttggcactgttgatgctgtgacatcggcagaccttgctctgctcgac
gcccggcaggttcagggagatgcccacacagccgcgcttaccagctccgtcaaccttgcc
ttcgtggtcggttcgttgacctcacataagtaccttccttga
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