Rhizorhabdus wittichii RW1: Swit_1143
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Entry
Swit_1143 CDS
T00538
Name
(GenBank) RND efflux system, outer membrane lipoprotein, NodT family
KO
K18139
outer membrane protein, multidrug efflux system
Organism
swi
Rhizorhabdus wittichii RW1
Pathway
swi01501
beta-Lactam resistance
swi02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Swit_1143
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Swit_1143
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
swi02000
]
Swit_1143
01504 Antimicrobial resistance genes [BR:
swi01504
]
Swit_1143
Transporters [BR:
swi02000
]
Other transporters
Pores ion channels [TC:
1
]
Swit_1143
Antimicrobial resistance genes [BR:
swi01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
Swit_1143
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
Swit_1143
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
Swit_1143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
TPR_11
Motif
Other DBs
NCBI-ProteinID:
ABQ67509
UniProt:
A0A9J9H9Z6
LinkDB
All DBs
Position
1286541..1288007
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AA seq
488 aa
AA seq
DB search
MPLSRAPFLRPAAVVGLPIALAACASIPDLGARPELRTPASVAAGQSLGGRTDADWPADG
WWQAYGDPQLAGLIEEGLRESPDAAAAAARFRQARGMAQAAGAPLLPSVGAGASAGLEKQ
SYNVGIPAQFVPKGWQDVGQASIDLSFDLDLWGRNRAALAAATSEAEAARIEQDQARLML
ATGIASAYADLARLHAERDVLAAAVELRAATRKLVGDRVRNGLDTRAELKQADAAVPAAR
ADLAAADEAIALVRNQIAALVGAGPDRGLGIARPALAALHPPGLPAQVTTELIGRRPDIA
AARAQAEAAASRIKVARADFFPAIRLGALVGVRSLGLDQLTDSGSTYGNVTPAVSLPIFR
GGALSGQYRGARGRYDEAVALYNRAVIAAYREVADAVTSQRAATDRLAQSRQALADSEEA
YAIARKRYEGGLSTYLNVLSSEEKLLQARRAVADLDARMFALDVALVRALGGGFTAASPA
LAKDDSHG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgagtcgcgcgcctttccttcgccctgccgccgtggtcggccttccgatcgcg
ctggccgcctgcgcatcgatacccgatctcggcgcccggccggagctgcgcacgcccgcg
agcgtcgccgccggccagagcctgggcgggcggaccgacgccgactggcccgccgacggc
tggtggcaggcctatggcgacccgcagctcgccgggctgatcgaggaagggctgcgcgaa
tcccccgacgccgccgctgccgccgcgcgcttccgccaggcgcggggcatggcgcaggcg
gccggcgcgccgctgctgccctcggtcggcgccggcgccagcgcgggcctggagaagcag
agctacaatgtcggcatccccgcgcagttcgtgcccaagggatggcaggacgtcgggcag
gcctcgatcgacctgtcgttcgacctcgacctgtggggccgcaaccgcgcggcgctcgcc
gccgccacctccgaggccgaggcggcacggatcgagcaggaccaggcgcggctcatgctc
gcgaccgggatcgcctcggcctatgccgacctcgcccggctccatgccgagcgcgacgtg
ctggcggcggcggtcgagctgcgcgccgccacgcgcaagctggtcggcgaccgggtccgc
aacggcctcgacacgcgcgccgagctgaagcaggccgacgcggcggtgccggcggcccgt
gccgacctcgccgccgccgacgaggcgatcgcgctggtccgcaaccagatcgccgcactg
gtcggcgccgggcccgatcgcggcctggggatcgcccggcccgcgctcgcggcgctccac
ccgccgggcctgccggcgcaggtgaccaccgagctgatcggccgccgccccgacatcgcc
gccgcgcgggcgcaggccgaggccgccgcgagccggatcaaggtcgcgcgggccgacttc
ttccccgccatccggctcggcgcgctggtcggtgtccgctcgctcggcctcgaccagctg
accgacagcggatcgacctatggcaacgtcaccccggcggtcagcctgccgatctttcgc
ggcggggcgctgagcggccagtatcgcggcgcgcgcggccgctatgacgaggcggtggcg
ctctacaaccgggcggtgatcgcggcctatcgcgaggtcgccgacgcggtgaccagccag
cgcgccgccaccgaccggctcgcccagtcgcgccaggcgctggccgattccgaagaggcc
tatgcgatcgcccgcaaacgctatgaaggcggcctgtccacctatctcaacgtgctgagc
tccgaggagaagctgctacaggcgcgccgcgcggtcgccgatctcgatgcccggatgttc
gcgctggacgtcgccctcgtccgcgccctcggcggcggtttcaccgccgcgtcccctgcc
ctcgccaaggacgattcccatggctga
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