Shewanella youngdeokensis: RGE70_08345
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Entry
RGE70_08345 CDS
T10660
Name
(GenBank) TolC family protein
KO
K12340
outer membrane protein
Organism
syou Shewanella youngdeokensis
Pathway
syou01501
beta-Lactam resistance
syou01503
Cationic antimicrobial peptide (CAMP) resistance
syou02020
Two-component system
syou03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RGE70_08345
09132 Signal transduction
02020 Two-component system
RGE70_08345
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RGE70_08345
01503 Cationic antimicrobial peptide (CAMP) resistance
RGE70_08345
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
syou02000
]
RGE70_08345
02044 Secretion system [BR:
syou02044
]
RGE70_08345
01504 Antimicrobial resistance genes [BR:
syou01504
]
RGE70_08345
Transporters [BR:
syou02000
]
Other transporters
Pores ion channels [TC:
1
]
RGE70_08345
Secretion system [BR:
syou02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
RGE70_08345
RTX toxin transporter
RGE70_08345
Multiple protein transporter
RGE70_08345
RaxAB-RaxC type I secretion system protein
RGE70_08345
Antimicrobial resistance genes [BR:
syou01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AcrEF-TolC [MD:
M00696
]
RGE70_08345
Multidrug resistance, efflux pump MdtEF-TolC [MD:
M00697
]
RGE70_08345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
WOT06745
LinkDB
All DBs
Position
1951606..1952982
Genome browser
AA seq
458 aa
AA seq
DB search
MYYIKILVLVIVALNISVVKSEELTLLIDKALKNNFQVINSQFELISSDYDKEKSLSYFY
PTVNIQANTTWTENTTDYPNPSNGQAFDNKYNSNGYSLSISQILLDYSKVYDYDLSKLDL
QINELKHNKILNDIIIKVVENYFSYLKFKAQYKATKAELNSSHARLAQIKRNNELGNVPK
TDVYEAYATKEQNARKLASIESDINIALINLNSTTQSTIVPRFDVQLNQDYNSIEPVLQN
GLKKNLVHKNYDIIIAKHNMTRAESTLDKSKAEFYPTLSASASYNFSDNNSIVETYEDDF
IYSINLTVPIASGGSSIYEYKKNKNKIMQSLSLYQQSIDEVGLSFDELVFNINDNVTAID
FLKEIILSNYAVYKGTQKAYRIGTKTLTDLLLSESNLYDSIRDFYSNQYDYIINVTKFDA
LLGPIDLNVVNTLSNSMVPIKNSFDLERLDSLSKDAHE
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgtattacataaaaatacttgtgttggttatagttgctttaaatatctcagtagttaaa
agtgaagagctgacattactgatagataaagcattgaaaaataattttcaggtgattaat
tcacaatttgagctgatttcatcagattatgataaggaaaagtcgttatcatatttttat
ccgacagtgaatattcaggcaaatacgacctggacagaaaatacaacagattacccaaat
ccaagtaatggtcaggcatttgataataaatataatagtaatgggtatagtttatctatt
tcacaaatcctgcttgattattcaaaagtatatgattatgacttaagtaagttagatttg
cagataaatgagttaaagcataataaaatccttaatgatattatcatcaaggttgttgaa
aactatttctcatatttgaaatttaaagcgcaatacaaagcaacgaaagcggagttaaat
tcatcacacgcccgattagcacaaattaaacgtaacaatgaactaggtaatgtgcctaaa
acggatgtgtatgaagcttatgcaacaaaagagcaaaatgctagaaagctagctagcatt
gaaagtgacattaacattgcgctaatcaatttaaactcaacaactcagtcgactatagtt
ccgagatttgatgtgcaattaaatcaagactataattcgattgaaccagttttacaaaat
ggcctgaagaaaaatctggttcataaaaattacgacataatcatagctaagcataatatg
accagggccgaaagcacgttagataaatcaaaagcagaattttatcctacgctttcggcg
tcagctagttataacttcagtgataataatagcattgttgaaacatacgaagatgatttt
atatattctatcaatttgactgtacctatagctagtggtggttcgagtatttatgaatat
aagaaaaataaaaacaagataatgcaaagtttgtcactataccaacagtccattgacgaa
gtagggctgagttttgacgagttggttttcaatattaatgacaatgtaacggcaattgat
tttttaaaagaaattatattgtctaattatgcggtatataaaggaactcaaaaagcttat
cgaatagggaccaaaacattaacagacctactgctatctgagtcaaacttgtatgacagt
attcgtgatttttattctaatcaatatgactacattatcaatgtcacaaaatttgatgcg
ttactggggccgatagacttaaacgttgttaacacgttatctaacagtatggtgcccata
aaaaactcgttcgacttggaaaggttagactcgttaagtaaggatgcgcatgagtaa
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