KEGG   PATHWAY: thaa02010
Entry
thaa02010                   Pathway                                
Name
ABC transporters - Thalassococcus sp. S3
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
thaa02010  ABC transporters
thaa02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Thalassococcus sp. S3 [GN:thaa]
Gene
CFI11_00270  [KO:K16784] [EC:7.6.2.-]
CFI11_00275  [KO:K16783]
CFI11_00280  [KO:K03523]
CFI11_00620  [KO:K11074]
CFI11_00625  [KO:K11075]
CFI11_00630  [KO:K11076] [EC:7.6.2.16]
CFI11_00635  [KO:K11073]
CFI11_01735  [KO:K02002]
CFI11_01925  [KO:K02036] [EC:7.3.2.1]
CFI11_02165  [KO:K15578] [EC:7.3.2.4]
CFI11_02170  [KO:K15577]
CFI11_02175  [KO:K15576]
CFI11_02765  [KO:K09969]
CFI11_02770  [KO:K09970]
CFI11_02775  [KO:K09971]
CFI11_02780  [KO:K09972] [EC:7.4.2.1]
CFI11_03000  [KO:K10111] [EC:7.5.2.-]
CFI11_03110  [KO:K11069]
CFI11_03115  [KO:K11070]
CFI11_03120  [KO:K11071]
CFI11_03125  [KO:K11072] [EC:7.6.2.11]
CFI11_03315  [KO:K10440]
CFI11_03320  [KO:K10440]
CFI11_03325  [KO:K10441] [EC:7.5.2.7]
CFI11_03330  [KO:K10439]
CFI11_03925  [KO:K01995]
CFI11_03935  [KO:K01997]
CFI11_03940  [KO:K01998]
CFI11_03945  [KO:K01999]
CFI11_03950  [KO:K01996]
CFI11_03965  [KO:K02011]
CFI11_04260  [KO:K09812]
CFI11_04265  [KO:K09811]
CFI11_04665  [KO:K12372]
CFI11_04670  [KO:K12371]
CFI11_04675  [KO:K12370]
CFI11_04680  [KO:K12369]
CFI11_04685  [KO:K12368]
CFI11_04735  [KO:K10440]
CFI11_04740  [KO:K10441] [EC:7.5.2.7]
CFI11_04955  [KO:K10112] [EC:7.5.2.-]
CFI11_04960  [KO:K10112] [EC:7.5.2.-]
CFI11_05380  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
CFI11_05385  phnD; phosphonate ABC transporter substrate-binding protein [KO:K02044]
CFI11_05390  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
CFI11_05395  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
CFI11_06275  [KO:K01999]
CFI11_06280  [KO:K01995]
CFI11_06285  [KO:K01996]
CFI11_06290  [KO:K01997]
CFI11_06295  [KO:K01998]
CFI11_06410  [KO:K10111] [EC:7.5.2.-]
CFI11_06445  [KO:K17315]
CFI11_06450  [KO:K17316]
CFI11_06455  [KO:K17317]
CFI11_06460  [KO:K10112] [EC:7.5.2.-]
CFI11_06675  [KO:K02001]
CFI11_06680  [KO:K02000] [EC:7.6.2.9]
CFI11_06685  [KO:K02002]
CFI11_07010  [KO:K10107]
CFI11_07015  [KO:K09689] [EC:7.6.2.12]
CFI11_07595  [KO:K02010] [EC:7.2.2.7]
CFI11_07600  [KO:K02011]
CFI11_07605  [KO:K02012]
CFI11_07620  [KO:K17323]
CFI11_07625  [KO:K17322]
CFI11_07630  [KO:K17325]
CFI11_07635  [KO:K17324]
CFI11_07640  [KO:K17321]
CFI11_07835  [KO:K11085] [EC:7.5.2.6]
CFI11_09080  [KO:K02010] [EC:7.2.2.7]
CFI11_09195  [KO:K02065]
CFI11_09200  [KO:K02066]
CFI11_10410  lptG; LPS export ABC transporter permease LptG [KO:K11720]
CFI11_10415  lptF; LPS export ABC transporter permease LptF [KO:K07091]
CFI11_11665  [KO:K01998]
CFI11_11670  [KO:K01997]
CFI11_11680  [KO:K01996]
CFI11_11685  [KO:K01995]
CFI11_11690  [KO:K01999]
CFI11_11745  [KO:K02040]
CFI11_11750  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
CFI11_11755  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CFI11_11760  [KO:K02036] [EC:7.3.2.1]
CFI11_11960  [KO:K01996]
CFI11_11965  [KO:K01995]
CFI11_11970  [KO:K01998]
CFI11_11975  [KO:K01997]
CFI11_11980  [KO:K01999]
CFI11_12315  [KO:K10440]
CFI11_12320  [KO:K10441] [EC:7.5.2.7]
CFI11_12325  [KO:K10439]
CFI11_12430  [KO:K01999]
CFI11_12435  [KO:K01997]
CFI11_12440  [KO:K01998]
CFI11_12445  [KO:K01995]
CFI11_12450  [KO:K01996]
CFI11_13885  [KO:K02012]
CFI11_14495  [KO:K05772]
CFI11_14500  [KO:K06857] [EC:7.3.2.6]
CFI11_14505  [KO:K05773]
CFI11_14700  glnQ; glutamine ABC transporter ATP-binding protein [KO:K09972] [EC:7.4.2.1]
CFI11_14755  [KO:K09971]
CFI11_14760  [KO:K09970]
CFI11_14765  [KO:K09969]
CFI11_14950  [KO:K10227]
CFI11_14955  [KO:K10228]
CFI11_14960  [KO:K10229]
CFI11_14965  [KO:K10111] [EC:7.5.2.-]
CFI11_15200  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
CFI11_15205  [KO:K02018]
CFI11_15210  modC; molybdenum ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
CFI11_15265  [KO:K01999]
CFI11_15270  [KO:K01997]
CFI11_15280  [KO:K01995]
CFI11_15285  [KO:K01996]
CFI11_15320  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
CFI11_15580  [KO:K15578] [EC:7.3.2.4]
CFI11_15585  ntrB; nitrate ABC transporter, permease protein [KO:K15577]
CFI11_15590  [KO:K15576]
CFI11_16635  [KO:K09810] [EC:7.6.2.-]
CFI11_16640  [KO:K09808]
CFI11_16810  [KO:K02002]
CFI11_16820  choW; choline ABC transporter permease subunit [KO:K02001]
CFI11_16825  choV; choline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
CFI11_16890  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
CFI11_16895  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
CFI11_16905  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
CFI11_16910  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
CFI11_17550  [KO:K01996]
CFI11_17555  [KO:K01995]
CFI11_17560  [KO:K01998]
CFI11_17565  [KO:K01997]
CFI11_17570  [KO:K01999]
CFI11_17760  [KO:K01996]
CFI11_17765  [KO:K01999]
CFI11_17770  [KO:K01998]
CFI11_17775  [KO:K01997]
CFI11_17780  [KO:K01995]
CFI11_17835  [KO:K23537]
CFI11_17840  [KO:K23535]
CFI11_17845  [KO:K23536]
CFI11_17850  [KO:K07335]
CFI11_17955  [KO:K05816] [EC:7.6.2.10]
CFI11_17960  [KO:K05815]
CFI11_17965  [KO:K05814]
CFI11_17970  [KO:K05813]
CFI11_17975  [KO:K15552]
CFI11_17980  [KO:K10831] [EC:7.6.2.7]
CFI11_17985  [KO:K15551]
CFI11_18235  [KO:K12536]
CFI11_18245  [KO:K07323]
CFI11_18740  [KO:K02195]
CFI11_18745  ccmB; heme exporter protein CcmB [KO:K02194]
CFI11_18750  ccmA; heme ABC exporter ATP-binding protein CcmA [KO:K02193] [EC:7.6.2.5]
CFI11_18825  [KO:K24821]
CFI11_19190  [KO:K02001]
CFI11_19195  [KO:K02000] [EC:7.6.2.9]
CFI11_19200  [KO:K02002]
CFI11_20045  [KO:K13896]
CFI11_20050  [KO:K13895]
CFI11_20055  [KO:K13894]
CFI11_20060  [KO:K13893]
CFI11_20685  [KO:K07335]
CFI11_20690  [KO:K23537]
CFI11_20695  [KO:K23535]
CFI11_20700  [KO:K23536]
CFI11_21340  [KO:K11709]
CFI11_21345  [KO:K11708]
CFI11_21350  [KO:K11710] [EC:7.2.2.5]
CFI11_21355  [KO:K11707]
CFI11_22090  [KO:K02012]
CFI11_22145  [KO:K10112] [EC:7.5.2.-]
CFI11_22450  [KO:K15580]
CFI11_22455  [KO:K15581]
CFI11_22460  [KO:K15582]
CFI11_22465  [KO:K10823 K15583]
CFI11_22885  [KO:K02062] [EC:7.6.2.15]
CFI11_22890  [KO:K02063]
CFI11_22895  [KO:K02064]
CFI11_23095  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
CFI11_23195  [KO:K02040]
CFI11_23330  [KO:K18893]
CFI11_23745  [KO:K10112] [EC:7.5.2.-]
CFI11_23995  [KO:K09688]
CFI11_24005  [KO:K10107]
CFI11_24010  [KO:K09689] [EC:7.6.2.12]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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