KEGG   PATHWAY: uah03030
Entry
uah03030                    Pathway                                
Name
DNA replication - Ursus arctos (brown bear)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
uah03030  DNA replication
uah03030

Organism
Ursus arctos (brown bear) [GN:uah]
Gene
113242207  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
113243358  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
113243417  POLE4; DNA polymerase epsilon subunit 4 isoform X1 [KO:K03506] [EC:2.7.7.7]
113244035  POLD4; DNA polymerase delta subunit 4 isoform X2 [KO:K03505]
113244099  RNASEH2C; ribonuclease H2 subunit C isoform X3 [KO:K10745]
113244119  POLA2; DNA polymerase alpha subunit B [KO:K02321]
113244285  RPA4; replication protein A 30 kDa subunit [KO:K10741]
113246985  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
113247242  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
113249507  [KO:K10743] [EC:3.1.26.4]
113251252  RFC3; replication factor C subunit 3 [KO:K10756]
113251303  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
113253907  RFC4; replication factor C subunit 4 [KO:K10755]
113256007  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
113256404  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
113257273  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
113257896  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
113258365  PCNA; proliferating cell nuclear antigen [KO:K04802]
113259112  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
113260519  RPA3; replication protein A 14 kDa subunit [KO:K10740]
113261153  PRIM2; DNA primase large subunit [KO:K02685]
113261196  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
113262419  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
113263419  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
113265297  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X2 [KO:K03111]
113266191  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
113266321  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
113266839  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
113267017  RFC5; replication factor C subunit 5 isoform X1 [KO:K10756]
113267778  RFC2; replication factor C subunit 2 [KO:K10755]
113267879  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
113268118  MCM4; DNA replication licensing factor MCM4 isoform X2 [KO:K02212] [EC:5.6.2.3]
113268426  RPA2; replication protein A 32 kDa subunit [KO:K10739]
113269132  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X3 [KO:K07466]
113269314  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
113269327  RNASEH1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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