KEGG   PATHWAY: umr03050
Entry
umr03050                    Pathway                                
Name
Proteasome - Ursus maritimus (polar bear)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
umr03050  Proteasome
umr03050

Other DBs
GO: 0000502
Organism
Ursus maritimus (polar bear) [GN:umr]
Gene
103656858  IFNG; interferon gamma [KO:K04687]
103657400  [KO:K10881]
103658259  [KO:K06698]
103658639  PSMC2; 26S proteasome regulatory subunit 7 [KO:K03061]
103658750  SEM1; 26S proteasome complex subunit SEM1 [KO:K10881]
103659502  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
103660313  PSMA4; proteasome subunit alpha type-4 isoform X1 [KO:K02728] [EC:3.4.25.1]
103660341  PSMB6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
103660584  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
103660779  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
103661007  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
103661036  PSMC4; 26S proteasome regulatory subunit 6B [KO:K03063]
103661161  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
103661230  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
103662209  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
103662680  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 isoform X1 [KO:K03032]
103664321  [KO:K11599]
103664901  PSMA8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
103665512  PSMB9; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
103665514  PSMB8; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
103665634  PSMC5; 26S proteasome regulatory subunit 8 isoform X1 [KO:K03066]
103665659  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 isoform X1 [KO:K03035]
103666073  PSMA6; proteasome subunit alpha type-6 isoform X1 [KO:K02730] [EC:3.4.25.1]
103666399  PSMB2; proteasome subunit beta type-2 isoform X2 [KO:K02734] [EC:3.4.25.1]
103667431  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 isoform X1 [KO:K03036]
103667513  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
103667517  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 isoform X1 [KO:K03029]
103668940  [KO:K03037]
103670329  PSMC1; 26S proteasome regulatory subunit 4 [KO:K03062]
103670332  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
103671026  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 isoform X1 [KO:K03039]
103671257  PSME4; proteasome activator complex subunit 4 [KO:K06699]
103672308  PSMC3; 26S proteasome regulatory subunit 6A isoform X1 [KO:K03065]
103672590  PSME3; proteasome activator complex subunit 3 [KO:K06698]
103672921  PSMC6; 26S proteasome regulatory subunit 10B isoform X1 [KO:K03064]
103673363  PSMA3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
103673640  PSMB10; proteasome subunit beta type-10 isoform X1 [KO:K02733] [EC:3.4.25.1]
103673708  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
103674226  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
103674365  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
103674585  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
103674995  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
103676082  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
103679276  PSME1; proteasome activator complex subunit 1 [KO:K06696]
103679277  PSME2; proteasome activator complex subunit 2 [KO:K06697]
103679757  [KO:K02732] [EC:3.4.25.1]
103681035  PSMB5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
103681064  PSMB11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
103682383  PSMA1; proteasome subunit alpha type-1 isoform X1 [KO:K02725] [EC:3.4.25.1]
121099783  ADRM1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
121106099  [KO:K03037]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
umr04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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