KEGG   Variovorax sp. PMC12: C4F17_03680
Entry
C4F17_03680       CDS       T05380                                 
Name
(GenBank) transporter
  KO
K12340  outer membrane protein
Organism
vam  Variovorax sp. PMC12
Pathway
vam01501  beta-Lactam resistance
vam01503  Cationic antimicrobial peptide (CAMP) resistance
vam02020  Two-component system
vam03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vam00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    C4F17_03680
  09132 Signal transduction
   02020 Two-component system
    C4F17_03680
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    C4F17_03680
   01503 Cationic antimicrobial peptide (CAMP) resistance
    C4F17_03680
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vam02000]
    C4F17_03680
   02044 Secretion system [BR:vam02044]
    C4F17_03680
   01504 Antimicrobial resistance genes [BR:vam01504]
    C4F17_03680
Transporters [BR:vam02000]
 Other transporters
  Pores ion channels [TC:1]
   C4F17_03680
Secretion system [BR:vam02044]
 Type I secretion system
  alpha-Hemolysin/cyclolysin transporter
   C4F17_03680
  RTX toxin transporter
   C4F17_03680
  Multiple protein transporter
   C4F17_03680
  RaxAB-RaxC type I secretion system protein
   C4F17_03680
Antimicrobial resistance genes [BR:vam01504]
 Gene sets
  Multipdrug resistance modules
   Multidrug resistance, efflux pump AcrEF-TolC [MD:M00696]
    C4F17_03680
   Multidrug resistance, efflux pump MdtEF-TolC [MD:M00697]
    C4F17_03680
SSDB
Motif
Pfam: OEP
Other DBs
NCBI-ProteinID: AVQ80125
LinkDB
Position
1:complement(802028..803467)
AA seq 479 aa
MTSSRPLHPSLLLLPALLMLGGPAFAQAQAQPRGDSALALSFDAARARMVDRSDKLAAAR
AAVDAKELQSQGLKGLGGPTVAVSGLAYAYNANLNLDLDPLNQKLGQIGSALPSSIQSLV
SRVPIPQLPNSYTLNRHDSGANASISAVWPIYLGGATDAVRGFVSAQTREAEADAEQAGH
EVDTLLVQRYFGAQLAQRAAVLRAQAERTIAQHDSAAQKMLAAGVISRVERLQASAAYEE
ARRNARKAENDAALAGVALARTLRADGTVVPQTPLFLISTPVEPLGYFIDSALTRHPGLG
KVAAKKSQAEQLHEGEEALRRPQVIAFGTREIKSGNADWVAGVGVRWTLYDSVDRDALSA
SSLKQVEQAERTGAQARSDIALLVERNWRALENARRQYLEMKASVELAQEVVKLRTSGLR
EGTSTTLDLIDAETNQAKVLTERAQAANDYVQALAQLLESAGLSEKFSDYIARADVKVN
NT seq 1440 nt   +upstreamnt  +downstreamnt
atgacaagctcccgcccccttcatccctccctgttgctgctgccggcgctgctgatgctg
ggcggcccggcgttcgcgcaggcccaggcgcagccccgcggcgacagcgccctggccctg
agcttcgacgccgcccgcgcccgcatggtcgaccgctcagacaagctggccgccgcccgc
gcggccgtcgacgccaaggaactgcagagccagggcctcaaggggctgggcggcccgacg
gtcgccgtctcggggctggcctatgcctacaacgccaacctgaacctcgacctcgatccg
ctcaaccagaagctcgggcagatcggctcggcgctgccgtcgtcgatccagagccttgtc
tcgcgcgtgccgattccgcagctgcccaacagctacacgctgaaccggcacgacagcggc
gccaacgcttcgatctccgccgtgtggccgatctacctgggcggcgcgaccgatgcggtg
cgcggcttcgtgtcggcgcagacgcgggaggccgaagccgatgccgagcaggccggccac
gaggtcgacacgctgctggtgcagcgctacttcggcgcccagctggcgcagcgcgcggcc
gtgctgcgcgcgcaggccgagcgcaccatcgcgcagcacgattcggcggcgcagaagatg
ctcgcggccggcgtgatctcgcgcgtggagcggctgcaggccagcgccgcctatgaagaa
gcgcggcgcaacgcccgcaaggcggagaacgacgccgcgctggccggcgtggcgctcgcg
cgcacgctgcgcgccgacggcacggtggtgccgcagacgccgctgttcctcatcagcacg
cctgtcgagccgctgggctacttcatcgactcggcgctcacgcgccatccgggcctgggc
aaggtcgcggccaagaagtcgcaggccgagcaactgcacgaaggcgaggaagcgctgcgc
cgcccgcaggtcatcgccttcggcacgcgcgaaatcaagagcggcaacgccgactgggtg
gccggcgtcggcgtgcgctggacgctgtacgactcggtcgaccgcgacgcgctatccgcc
tcatcgctcaagcaggtcgagcaggccgagcgcaccggcgcccaggcgcgcagcgacatc
gcgctgctggtcgagcgcaactggcgcgcgctggaaaacgcgcgccgccagtatctggaa
atgaaggcctcggtcgagctggcgcaagaggtcgtcaagctgcgcacctccggcctgcgc
gaaggcacgagcaccacgctcgacctgatcgatgccgagaccaaccaggccaaggtgctg
accgaacgcgcgcaagccgccaacgactacgtgcaggcgctcgcgcaactgctcgaaagc
gcgggcctgtccgagaagttttccgactacatcgcgcgtgcagacgtgaaggtgaattga

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