Variovorax sp. PMC12: C4F17_04350
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Entry
C4F17_04350 CDS
T05380
Name
(GenBank) RND transporter
KO
K18139
outer membrane protein, multidrug efflux system
Organism
vam
Variovorax sp. PMC12
Pathway
vam01501
beta-Lactam resistance
vam02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
C4F17_04350
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
C4F17_04350
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_04350
01504 Antimicrobial resistance genes [BR:
vam01504
]
C4F17_04350
Transporters [BR:
vam02000
]
Other transporters
Pores ion channels [TC:
1
]
C4F17_04350
Antimicrobial resistance genes [BR:
vam01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
C4F17_04350
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
C4F17_04350
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
C4F17_04350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
AVQ80243
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All DBs
Position
1:934001..935374
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AA seq
457 aa
AA seq
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MVAAAALALGGCTLFQPVAREQQPLSVPSAWRQQAASADASNAAAMPSERWWTAFRDPQL
DALIDHALLTNNDLAAAGIRVQRAQLQAGLANTNLTPSVAGQLNTSRGHDLQRGGGAGST
SSSLVTLSYELDLWGRLAALRSAADWELKATVADRRAAALALVGTTAGLYWQTGYLNQRI
ALSEAGIEDGRRILALVRTKYAAGAVSGLDVAQAGQNLATQEAAHTQLLQQRVEARNALA
ILFDLPPEPLAGEPARLPDADVPVVDAGVPASLLGRRPDLQAAELRLRGALANVDATRTG
FYPTLSLTGSLGTSSTALGDLLRNPVATLGAGLALPFLQWNTARLTVGVSQTQYEEAVVG
FRQSLYTALSEVENALSSRTQLREERIKLVLALQEAQRAERLSEVRYRAGATALQPVLDA
KDRRRSAEVSLALNRLNQFNATMTLYKALGGGAAVAP
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
gtggttgcggccgccgcattggcgctcggcgggtgcacgctgttccagccggtggcgcgc
gagcagcagccgttgagcgtgccttcggcgtggcggcagcaggcggcgtcggccgatgca
tcgaatgccgccgcgatgccgtccgagcgatggtggacggccttccgcgatccgcagctg
gacgctctgatcgaccacgcactgctcaccaacaacgacctggcggccgcgggcatccgc
gtgcagcgtgcgcagttgcaggccggccttgccaacaccaacctcacgccgagcgtggcg
ggccagctcaacacgagtcgcggccatgacctccagcgcggcggcggagcgggctcgacc
tccagttcgctggtcacgctgagctacgagctcgacctgtgggggcgcctcgcggcattg
cgcagcgccgccgactgggagttgaaggccaccgtggccgaccgccgggccgccgcgctc
gcgctggtcggcacgacggcgggcctctactggcagaccggctacctgaaccagcgcatt
gcactgagcgaagcgggcatcgaggacggccggcgcatcctggcgctggtgcgcaccaag
tacgcggccggcgcggtgtcggggctggacgtggcgcaggccggccagaacctggcgacg
caggaggcggcgcatacgcaactgctgcagcagcgcgtggaggcgcgcaatgccctcgcg
atcctgttcgacctgccgccggagccgctggcgggcgagcccgcgcggctgccggatgcc
gacgtgcccgtcgtcgatgccggcgtgcccgccagcctgctgggccgccggcccgatctg
caggcggcggaactgcgcttgcgtggcgcgctggcgaatgtcgacgccacgcgcaccggc
ttctatcccacgctgagcctgacgggctcgctcggcacttcgagcacggcgctgggcgat
ctgctgaggaaccctgtggccaccctgggcgccgggctggcgctgccgttcctgcaatgg
aacaccgcgcggctgacggtcggcgtgtcgcagacgcagtatgaagaagcggtggtgggg
ttcaggcagtcgctctacacggcgctgtccgaggtcgagaacgcgctgtcgtcgcgaacg
cagctgcgcgaggagcgcatcaagctggtgctggcgctgcaggaggcgcagcgggcggag
agactgtccgaggtgcgttacagggccggagcgaccgcgctgcagccggttctggatgcc
aaggaccggcgccgcagcgccgaggtatcgctcgcgctgaaccgcctgaaccagttcaac
gcgacgatgacgctctacaaggccctgggtgggggcgcggcggtcgcgccgtag
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