Variovorax sp. 38R: IG196_19900
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Entry
IG196_19900 CDS
T10235
Name
(GenBank) efflux transporter outer membrane subunit
KO
K18139
outer membrane protein, multidrug efflux system
Organism
vav Variovorax sp. 38R
Pathway
vav01501
beta-Lactam resistance
vav02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IG196_19900
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
IG196_19900
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vav02000
]
IG196_19900
01504 Antimicrobial resistance genes [BR:
vav01504
]
IG196_19900
Transporters [BR:
vav02000
]
Other transporters
Pores ion channels [TC:
1
]
IG196_19900
Antimicrobial resistance genes [BR:
vav01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
IG196_19900
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
IG196_19900
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
IG196_19900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
NNH2
Motif
Other DBs
NCBI-ProteinID:
QOF76620
UniProt:
A0A7L8SAX1
LinkDB
All DBs
Position
complement(4321518..4322996)
Genome browser
AA seq
492 aa
AA seq
DB search
MTESFAVRALRRTPVVAAALAVVALAGCADMAGIGSHATLRDASTLGIAADPARATVPAL
DSQWWQAFGDSQLNALVDQAVAGNPNLQVARARLVRAQASADIAGAALLPKVGADLNLNR
QKFNSNYIYPAPLGGSTQNIGLLQLGASWELDFFGKNRSALDTALGAANAAAADADAARV
LLASNVARSYFQWARLNEQVEVAKRTLAQRDETFKLVRDRVSAGLDTRLELRQSEGGLPE
ARQQIEALNEQIALQQHALDALVGQPNVSASLKPPVLAGVKPMALQANIPADLLGRRADI
AAARWRVEAATSDVANAKTQFYPNVNLTAFAGFQSLGFGKLLKSGSEQWGVGPAIHLPIF
EGGRLRANLRGKSADLDVAIESYNATVLDAVRDAADQVSSAQSITRQQTEQHAAQTAAEG
AYDIAVQRYRAGLGNYLNVLTAETAVLAQRRLAVDLAARALDTQVGLARALGGGWQPPAT
ATASAPTAATQN
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgactgagtctttcgccgtgcgcgcgctgcgtcgcacgcctgtcgtggccgccgcgctg
gcggtggtcgcgctcgccggctgcgccgacatggccggcatcggctcgcacgccacgctg
cgcgatgcgtccacgctcggcattgcggccgatcccgcgcgcgccaccgtgcccgccctc
gacagccagtggtggcaggccttcggcgacagccagctcaatgcgctggtcgaccaggcc
gtggccggcaacccgaatctgcaggtcgcgcgtgcgcgtctcgtgcgtgcccaggcctcg
gcggacatcgccggcgcggcgctgctgcccaaggtcggcgccgacctcaacctgaaccgc
cagaagttcaacagcaactacatctacccggcgccgctgggcggctcgacgcagaacatc
ggcctgctgcagctcggcgcgagctgggagctcgacttcttcggcaagaaccgcagcgcg
ctcgacaccgccctcggcgcagccaatgccgccgcagccgacgccgatgccgcgcgcgtg
ctgctcgcgagcaacgtggcgcgcagctactttcagtgggcgcgcctgaacgaacaggtc
gaggtggccaagcgcacgctggcccagcgcgacgaaaccttcaagctggtgcgcgaccgc
gtctcggccggcctcgacacgcgcctcgaactgcgccagagcgaaggcggcctgcctgaa
gcacgccagcagatcgaagcgctcaacgagcagatcgcgctgcaacagcacgcgctcgat
gcgctcgtggggcagcccaatgtgtcggcctcactcaagccgccggtactcgccggcgtg
aaaccgatggcgctgcaggcgaacattccggccgacctgctgggccgccgcgccgacatc
gccgccgcgcgctggcgcgtcgaagcggccaccagcgacgtggccaatgccaagacccag
ttctatcccaacgtgaacctcacggcctttgccggcttccagagcctgggctttggcaag
ttgctcaagtcgggcagcgagcagtggggcgtgggcccggccatccacctgccgattttt
gaaggcgggcgcctgcgtgccaacctgcgcggcaagtcggccgacctcgacgtggccatc
gaaagctacaacgccaccgtgctcgacgccgtgcgcgacgcggccgaccaggtgtcgagc
gcgcagtcgatcacgcgccagcagaccgagcagcacgccgcgcagacggccgccgaaggc
gcctacgacattgccgtgcagcgctaccgcgcgggcctgggcaactacctcaacgtgctg
accgccgaaaccgccgtgctggcccagcgccggctcgcggtcgacctggcggcccgcgcc
ctcgacacgcaggtgggcctggcgcgcgccctgggcggcggctggcaaccgccggccacc
gccacggcgtcggcgccgacggccgccacccagaactga
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