Vibrio iocasae: SNR28_24025
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Entry
SNR28_24025 CDS
T11169
Symbol
tolC
Name
(GenBank) outer membrane channel protein TolC
KO
K12340
outer membrane protein
Organism
vic Vibrio iocasae
Pathway
vic01501
beta-Lactam resistance
vic01503
Cationic antimicrobial peptide (CAMP) resistance
vic02020
Two-component system
vic03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
SNR28_24025 (tolC)
09132 Signal transduction
02020 Two-component system
SNR28_24025 (tolC)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
SNR28_24025 (tolC)
01503 Cationic antimicrobial peptide (CAMP) resistance
SNR28_24025 (tolC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vic02000
]
SNR28_24025 (tolC)
02044 Secretion system [BR:
vic02044
]
SNR28_24025 (tolC)
01504 Antimicrobial resistance genes [BR:
vic01504
]
SNR28_24025 (tolC)
Transporters [BR:
vic02000
]
Other transporters
Pores ion channels [TC:
1
]
SNR28_24025 (tolC)
Secretion system [BR:
vic02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
SNR28_24025 (tolC)
RTX toxin transporter
SNR28_24025 (tolC)
Multiple protein transporter
SNR28_24025 (tolC)
RaxAB-RaxC type I secretion system protein
SNR28_24025 (tolC)
Antimicrobial resistance genes [BR:
vic01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AcrEF-TolC [MD:
M00696
]
SNR28_24025 (tolC)
Multidrug resistance, efflux pump MdtEF-TolC [MD:
M00697
]
SNR28_24025 (tolC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
LntA_helical
Rimk_N
Motif
Other DBs
NCBI-ProteinID:
XHF84491
LinkDB
All DBs
Position
2:3122421..3123734
Genome browser
AA seq
437 aa
AA seq
DB search
MKKILPLLISVTLGSASSLAYAEDLAEIYNLAKENDPTLLRSAANRDAAFEAITSSRSTL
LPQINLTAGYDIKRSDPSSNSAENNALSAGINFTQELYKRSSWITLDQAEKTARQSDAAY
AAEQQNLILRVSTAYFEVLRAQDSLEFVRAEKAAVARQLEQTKQRFEVGLSAITDVHDAQ
AQYDTVLANEVVSENNLINSYESLREITGQAHTNLDILDTARFSADRMNESPEVLLEQAQ
TQNLTLLTARIAQDIARDNISLASANRLPSLTLDGGYNYSDISNMPSAPDADSNNFNIGL
NLSVPLYTGGNLTSLVKQAEFNYVAASEDLEASYRSIVTTVRSSYNNVNASIGTIKAYEQ
SVVSAKSALEATEAGFDVGTRTIVDVLDSTRSLYDANRNLSDARYNYIISILNLKQAVGT
LSEQEILDISAGLKSAS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaattctaccacttttaatcagtgtgaccctaggaagtgcttcatcacttgca
tacgctgaagaccttgctgaaatttacaaccttgctaaagaaaacgatccaacgctacta
cgctctgcggctaacagagatgcagcgttcgaagcgattacatccagccgcagtacactt
ttgccacaaataaatcttacagctggctacgatattaaaagaagcgacccttcatcaaac
tctgcagaaaacaatgcattgtctgctggaatcaactttacgcaagagctttataaacgt
tcaagctggattactctagatcaggcagaaaaaacagctcgccaatctgatgccgcttat
gcagcggagcagcaaaatctaattcttcgtgtttcaacagcatacttcgaagtactacgc
gctcaggatagcctggagtttgtacgtgctgagaaagcagcggttgctcgtcagctagaa
caaaccaaacaacgttttgaagtgggtctgtctgcaatcactgacgttcatgacgcacaa
gctcagtatgacaccgtattagcaaacgaagtggttagcgaaaacaacctgattaacagc
tatgagtctcttcgtgagattaccggtcaggctcatactaacctggacattttggacact
gctcgtttcagcgcagatcgtatgaatgagtcaccagaagtgcttcttgagcaagcacaa
acgcaaaacctgacattgcttacagcacgaattgctcaggacattgcacgtgataacatt
tcgctagcaagcgctaaccgccttccatcgctaactctagatggcggatacaactattct
gatatttccaatatgccatcagcgcctgatgctgattcaaacaactttaatattggtctt
aacctgtcagttccactttataccggtggcaacctaacttctctggttaaacaggctgag
ttcaattacgttgcagcgagtgaagatcttgaagcgagctaccgcagcatcgtgacaacc
gtacgaagctcatacaacaacgttaacgctagtattggtactatcaaggcatacgaacag
tctgtagtgtctgcaaagtcagctcttgaagcgaccgaagctggttttgatgtaggtact
cgtaccatcgttgatgttctggattcaactcgtagcctatacgatgcgaaccgtaacctt
tcggacgctcgttacaactacatcatcagcatcctgaatcttaagcaggctgttggtacg
ctgagtgagcaagaaattttggacatcagtgcaggactgaaatctgcgagctaa
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