Variovorax paradoxus EPS: Varpa_4298
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Entry
Varpa_4298 CDS
T01392
Name
(GenBank) type I secretion outer membrane protein, TolC family
KO
K12340
outer membrane protein
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe01501
beta-Lactam resistance
vpe01503
Cationic antimicrobial peptide (CAMP) resistance
vpe02020
Two-component system
vpe03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
Varpa_4298
09132 Signal transduction
02020 Two-component system
Varpa_4298
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Varpa_4298
01503 Cationic antimicrobial peptide (CAMP) resistance
Varpa_4298
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_4298
02044 Secretion system [BR:
vpe02044
]
Varpa_4298
01504 Antimicrobial resistance genes [BR:
vpe01504
]
Varpa_4298
Transporters [BR:
vpe02000
]
Other transporters
Pores ion channels [TC:
1
]
Varpa_4298
Secretion system [BR:
vpe02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
Varpa_4298
RTX toxin transporter
Varpa_4298
Multiple protein transporter
Varpa_4298
RaxAB-RaxC type I secretion system protein
Varpa_4298
Antimicrobial resistance genes [BR:
vpe01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AcrEF-TolC [MD:
M00696
]
Varpa_4298
Multidrug resistance, efflux pump MdtEF-TolC [MD:
M00697
]
Varpa_4298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
ADU38467
UniProt:
E6V952
LinkDB
All DBs
Position
4621817..4623364
Genome browser
AA seq
515 aa
AA seq
DB search
MPPRPRLLPLSAALASVIATLLALPAQGQTLNELYDSARGYDATYQGARAQYDANVARAA
QAKAGILPAVGLTAGVNRSSLDIDTLTGTSRGASASRDFNTQNVGINATQPLYRPANWAT
YEQGKRQTEIALAVLTTAEQDLIVRVSQAYFDVLASQDSLALVRAQKVAVAEQLASAKRN
FEVGTSTITDSREAQARYDLVIAQEIAAENDLQVKKIVLDQLVGRPGSVPVPLAVPVVLP
TAQPADINAWVAQADEVHPAIQQARLGLDVAGLEVQKAQAGHKPTLDANLGYNVTRNPTG
TSTSTVGTRVNAATVGVTFNLPLFAGFATENRIKETLALEDQSRSVLDGTRRSVAQATRA
AYLGLVSGAGQVKALEAAEASSQSALDANKLGYQVGVRINIDVLNSQSQLFQTKRDLAQA
RYNVLLGNLKLRQANGTLTTADMNAINATLASNGSTPAVPSVTTTPDRSPAPSSTTVTPP
SIPVVPPVPVQPFNPTPPTMPTAPVPPVIVNPPVR
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgcctccaaggccccggcttctgccactttccgcagcactcgccagcgttatcgcgact
ctgcttgcactgccggcccaaggccagacactgaacgaactctatgactccgcccgcggc
tacgacgccacgtaccagggcgcccgggcgcagtacgacgcgaacgtcgcgcgcgccgcg
caggccaaggccggcatcctgccggccgtcgggctcacggccggcgtgaaccgcagcagc
ctggacatcgacaccctcacgggcaccagccgaggtgccagcgcctcgcgcgacttcaac
acgcagaacgtcggcatcaacgccacgcagccgctctaccgccccgccaactgggccacc
tacgagcagggcaagcgccagacggagatcgcgctggcggtgctcaccaccgccgagcag
gacctgatcgtgcgcgtgagccaggcgtacttcgatgtgctcgcaagccaggacagtctg
gcgctggtgcgtgcgcaaaaggtcgccgtggccgaacagctcgcgtcggccaagcgcaac
ttcgaagtcggcacctccaccatcaccgactcgcgcgaagcccaggcccgctacgacctg
gtgatcgcgcaggagatcgccgccgagaacgacctgcaggtcaagaagatcgtgctcgac
caactcgtcggccgccccggcagcgtgccggtgccgctggccgtgccggtcgtgctgccg
actgcccaacccgcggacatcaacgcctgggtcgcgcaggccgacgaggtgcatcccgcg
atccagcaggcgcgcctcggactcgatgtggctgggctcgaagtgcagaaggcgcaggcc
ggccacaagcccacgctcgacgccaacctgggctacaacgtcacgcgcaacccgacgggc
accagtaccagcaccgtgggcacgcgcgtcaacgccgccacggtcggtgtcacgttcaac
ctgccgctcttcgcgggctttgcgaccgagaaccgcatcaaggaaacactggcgctcgaa
gaccagtcgcgcagcgtgctcgacggcacccggcgcagcgtggcccaggccacgcgcgcg
gcgtacctcggcctcgtgtcgggtgcgggccaggtgaaagcgctggaagcggccgaggcc
tcgagccagagcgcgctcgatgccaacaagctcggctaccaggtgggcgtgcgcatcaac
atcgacgtgctcaactcgcagagccagctgttccagaccaagcgcgatctcgcgcaggcg
cgctacaacgtgctgctgggcaacctgaagctgcgccaggccaacggcacgctgacgacg
gcggacatgaacgcgatcaacgcgacgctggcgagcaacgggagcacgccggcggtgccc
tcggtcacgacgacgccggatcgttcgcctgcgccgtcttcgacgacggtgacgccgccc
agcattccggtggtgccgccagtgccggtgcagccgttcaacccgacgcctccgacgatg
ccgacggctccggtgccgccggtgatcgtgaatccgccggtgcgctga
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