Variovorax paradoxus EPS: Varpa_4316
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Entry
Varpa_4316 CDS
T01392
Name
(GenBank) RND efflux system, outer membrane lipoprotein, NodT family
KO
K18139
outer membrane protein, multidrug efflux system
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe01501
beta-Lactam resistance
vpe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_4316
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Varpa_4316
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_4316
01504 Antimicrobial resistance genes [BR:
vpe01504
]
Varpa_4316
Transporters [BR:
vpe02000
]
Other transporters
Pores ion channels [TC:
1
]
Varpa_4316
Antimicrobial resistance genes [BR:
vpe01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
Varpa_4316
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
Varpa_4316
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
Varpa_4316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
ADU38485
UniProt:
E6V970
LinkDB
All DBs
Position
complement(4644368..4645798)
Genome browser
AA seq
476 aa
AA seq
DB search
MQKIQMRWLRRLSPVTWVGALWLAGCAVPGDPPPHAVAPPASWQRAQPDANASPVDARWW
SQLGSTELDTLIAQAQARNQDLAMALARVDGARAQARIAGAQRLPELTGQIDTSRQGRMG
GQAAVDGNAHAIGFAARYELDLWGRQGALHREAQQGLRASVFERDAVQLSVTAEVASSWL
QMVGLRERVAIACSNLENAQRVLRLVESRGRAGAATPLDLAQQRGLAATRERELARLQQQ
ARHAETALALLLGLPEPTATSAAERTRLEALRISPISAGLPSQLLVRRPDLTQAEARLAA
ADANVRAARAAMLPRVTLTASVGLQGQAAGGLFDNPIYSLAAGLAAPIFDGGRLAGERDL
AVARREELLGAYRAAIIGAFADAQTALDAVAGSDAQASAQVEELLQARRAAELSELRYRA
GAETLLVLLDAQRVLYSAQDLDVQLRQGRLQARVALYRALGGGWRDEASVLAQGER
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaattcaaatgcgttggctgcggcgcctctcgcccgtgacgtgggtgggcgcg
ttgtggctcgcgggttgtgccgtgcctggcgatccgccgccgcacgctgtggcgccgccc
gcatcctggcaacgcgcgcagcccgatgcgaacgcctcgcccgtcgatgcacgctggtgg
agccagctcggcagcaccgaactcgacacgctgatcgcacaggcgcaggcgcgcaaccag
gacctggcgatggcgctcgcccgtgtcgatggcgcgagagcgcaggcgcgcatcgcgggc
gcgcagcggctgcccgaactgacaggccagatcgacacaagccgccagggccgcatgggc
ggacaggcggcggtcgacggcaacgcgcacgcgatcggcttcgcggcgcgctacgaactc
gacctgtgggggcgccagggcgcgctgcatcgcgaggcgcagcaaggcctgcgtgccagc
gtgttcgagcgcgacgcggtgcagctcagcgtgacggccgaagtcgcgtcgtcctggctg
cagatggtgggcttgcgcgagcgcgttgcgatcgcgtgcagcaatctcgagaatgcgcag
cgcgtcctgcgactggtggaatcgcgcggccgcgccggtgcagccacgccgctggacctt
gcccagcagcgcggcctggcggcaacgcgggagcgcgaactcgcgcgcctgcagcagcag
gcgcgccatgccgagaccgcgctggctcttttgctcggcctgcccgaacccacagcgaca
tcggctgcggagcggacgcggctcgaagcactgcggatttctcccatctcggcgggactg
ccgtcgcaactgctggtgcgccgtcccgatctcacgcaagccgaagcgcggctcgcggct
gccgatgcgaacgtgcgggcggcacgtgctgcgatgctgccgcgcgtcacgctgacggca
tctgtcggcctgcaagggcaggctgccggcgggttgttcgacaacccgatctacagcctc
gctgccggcctggcggcgcccatcttcgacggcgggcggctggcgggcgaacgcgacctt
gccgtagcgaggcgcgaggaattgctcggcgcctaccgcgcggccatcatcggcgccttc
gcggatgcgcagacagcgctcgacgcggtggcgggctccgatgcgcaggcatcggcacag
gtcgaggaactgctgcaggcgcgccgcgcggcggaactctccgagctgcgataccgggcc
ggtgccgagacgctgcttgtcctgctcgatgcgcaacgtgtgctgtacagcgcacaggat
ctggacgtccaactgcgccagggccgactgcaggcacgcgttgcgttgtatcgcgcgctg
ggtggcggatggcgcgacgaggccagcgtgctcgcgcagggcgagcgctga
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