Variovorax paradoxus EPS: Varpa_4644
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Entry
Varpa_4644 CDS
T01392
Name
(GenBank) RND efflux system, outer membrane lipoprotein, NodT family
KO
K18139
outer membrane protein, multidrug efflux system
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe01501
beta-Lactam resistance
vpe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_4644
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Varpa_4644
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_4644
01504 Antimicrobial resistance genes [BR:
vpe01504
]
Varpa_4644
Transporters [BR:
vpe02000
]
Other transporters
Pores ion channels [TC:
1
]
Varpa_4644
Antimicrobial resistance genes [BR:
vpe01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
Varpa_4644
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
Varpa_4644
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
Varpa_4644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
LppA
Motif
Other DBs
NCBI-ProteinID:
ADU38807
UniProt:
E6UX90
LinkDB
All DBs
Position
complement(5060950..5062428)
Genome browser
AA seq
492 aa
AA seq
DB search
MVLSPANSPSRRALAPIALVALLLAGCAVGPDYVRPQMDVPVAYKETGPWKTAKPQLIDA
SHPWWEAYGDTTLSALVVQANAANQNIRVAEAQYREAQAIAAAAHAGFFPTVGLDAGANR
AQTNSTGVTKRATTDTLGLAASWEPDLWGAVRRSVEAGNANTEASADDLAGARLSIQTTL
AQDYLQIRVIDLQRGLYASTTAAYAKALELTQHQYAAGTVLRSDVALAESQLKTAEAQAV
DLEAQRRQLEHAVAVLTGQAPASFSLAPLASSAETTAASLSSTAALRVQLPVTPAGLPSE
LLERRPDIAGAERRVQAANANIGVAKAAYYPQIVLSASGGFSAGNLASLFNTPSRVWSLG
AALAQTVFDGGLRKAHTEQAVAAYDASVAQYKQTVLGGFQQVEDNLAMLRVLDRESALQA
QAVQASQLAERLALSQYRAGTATYLSVVTAQQFSLTNQRTAAQVLGRQLAASVSLIAATG
GGWTATDATSGN
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggttctctctcctgccaactccccatcacgcagggcgctcgcgccgatagccctcgtc
gcactgctcctcgcaggctgcgccgtcggccccgactacgtccgcccgcagatggacgtt
ccggtcgcctacaaggaaaccggcccctggaagaccgcaaagccgcagctcatcgacgcc
agccatccctggtgggaggcctacggcgacaccacgctgagcgcgctggtcgtgcaggcc
aacgccgccaaccagaacatccgcgtcgccgaagcccagtaccgcgaggcgcaggccatc
gccgccgccgcgcatgcgggcttcttcccgaccgtgggcctcgatgcaggcgccaaccgc
gcgcagaccaacagcaccggcgtcacgaagcgcgcgaccaccgacaccctcggcctcgcc
gccagctgggagcccgacctgtggggcgccgtgcgccgctccgtcgaggccggcaatgcg
aatacggaggccagcgccgatgacctggccggcgctcgcctcagcatccagaccacgctc
gcgcaggactacctgcagatccgcgtcatcgatctgcagcgcggcctgtacgccagcacc
acggccgcctacgccaaggcgctcgaactcacgcagcaccaatacgcggccggcacggtg
ctgcgctccgacgttgcgctcgcggaaagccagctcaagaccgccgaagcgcaggccgtc
gatctcgaagcgcagcgccgccagctcgaacacgccgtcgccgtgctgacgggacaggcg
cccgcatccttctcgctggcgccgctcgcctcgtccgcagagacgacggccgcatcgctc
tcgtccaccgccgcactgcgcgtgcagctcccggtcacgcccgcgggcctgccttcggaa
ctgctcgaacgccgtcccgacatcgccggcgcagagcgccgcgtgcaggcggccaacgcc
aacatcggcgttgccaaggccgcgtactacccgcagatcgtactcagcgcgagcggcggc
ttcagcgccggcaacctcgcttcgctcttcaatacgcccagccgcgtgtggtcgctcggc
gcggcgctcgcacagacggtgttcgacgggggcttgcgcaaggcgcacaccgaacaggcc
gtggccgcgtacgacgcctcggtcgcgcaatacaagcagaccgtgctcggcggcttccag
caggtcgaggacaaccttgcgatgctgcgtgtgctcgaccgcgaatccgcgctgcaggca
caggccgtgcaggcctcgcaactggccgagcgcttggcgctcagccaataccgcgccggc
actgccacgtacctgagcgtggtcacggcgcagcagttctcgctcaccaaccagcgcacc
gccgcgcaagtgctcggtcgccagctcgcggccagcgtgtcgctgatcgcggcgaccgga
ggcggctggactgcaaccgatgcgacttccggaaattga
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