Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00114
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Entry
AMD24_00114 CDS
T04108
Symbol
tolC
Name
(GenBank) Outer membrane protein TolC precursor
KO
K12340
outer membrane protein
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii01501
beta-Lactam resistance
xii01503
Cationic antimicrobial peptide (CAMP) resistance
xii02020
Two-component system
xii03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
AMD24_00114 (tolC)
09132 Signal transduction
02020 Two-component system
AMD24_00114 (tolC)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
AMD24_00114 (tolC)
01503 Cationic antimicrobial peptide (CAMP) resistance
AMD24_00114 (tolC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xii02000
]
AMD24_00114 (tolC)
02044 Secretion system [BR:
xii02044
]
AMD24_00114 (tolC)
01504 Antimicrobial resistance genes [BR:
xii01504
]
AMD24_00114 (tolC)
Transporters [BR:
xii02000
]
Other transporters
Pores ion channels [TC:
1
]
AMD24_00114 (tolC)
Secretion system [BR:
xii02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
AMD24_00114 (tolC)
RTX toxin transporter
AMD24_00114 (tolC)
Multiple protein transporter
AMD24_00114 (tolC)
RaxAB-RaxC type I secretion system protein
AMD24_00114 (tolC)
Antimicrobial resistance genes [BR:
xii01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AcrEF-TolC [MD:
M00696
]
AMD24_00114 (tolC)
Multidrug resistance, efflux pump MdtEF-TolC [MD:
M00697
]
AMD24_00114 (tolC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
ALJ56309
UniProt:
A0A0P0FYD1
LinkDB
All DBs
Position
complement(119838..121670)
Genome browser
AA seq
610 aa
AA seq
DB search
MRSNILEGQDSQCYRRNSPFEKRVTAVGKLSSTRPEGQLARCNFQEDLRLLVRKWHLGSV
LSTVLFTTSLQAELSITSPSFFLIPSSGAQSSFPVASYQATPFFPLTSLPVPFCSRRSNR
MSLASVANFSASGVLFVTPLLASDSVPHVRPDRIKKLGINPKLLTLNDAMRYALRHNPEI
LNSIQQIRSVHGKLISTRAQLLPRLVATSAFQDVPSSITNAFNEIPPVTDSSPMKFPSGR
GTVNHFFWKTQLAAQQLVFDGGGSLAGMRAVKHQENMSFFTLRSTIDSVIAQVKTAFFRV
ILDRALVAVQEQSVALLEDQLESQKKHYQVGTVPKLDVLQAQAAVASAASTLVRVQNNLC
ISQHQLVKLLGMNYTKHAEIPFRVVGDLEVRFCAVSSEEAVRIGLARSPILKAQRECILS
QAASVREAISNRYPKITLGGGYLVQNNTRSHPRRATGGWFFGLNGTWNVFGGLNAYSSEV
IQSKALLEQSRIRYDNSARSVIASIQQSIADLRQAQEVIRSQQANVVQAAGTLRLAREQF
DSGVGTQLEVFNAKIKLLQSQTAVLQARFGYIQALAQYEAMLSINTQYKETEALLTNKEQ
QHFEKLNSAG
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtaacatcttggaagggcaggatagtcagtgctatagaagaaattcccctttt
gaaaaaagagtcacagcagttggcaagttgtcgagtacccgtcctgaaggtcaattagcc
aggtgtaactttcaagaagacctacgcctgctagttagaaagtggcatctgggaagtgtg
ttgagtactgtcctttttactacttctctccaggcagagctttcgattacttccccgtca
ttttttcttattccctcttcgggggcacaaagttcttttccagtcgcatcctaccaagct
actcccttttttccactgacgtctctaccagtacctttctgttctcgtcggtctaaccgg
atgtcactggcctccgtagcgaatttttccgcctctggtgtactctttgtaacaccattg
cttgccagtgatagcgttcctcatgtccgtcccgataggataaaaaaacttggcattaat
cccaagcttctcactctcaacgatgccatgcgatatgcgcttcgacacaatccagaaatc
ctgaattccatccagcaaatccggtctgttcatggaaagcttattagcacacgtgcccag
cttctgccacgacttgtcgcaactagtgcttttcaagatgtgccatcttcaattaccaac
gcctttaatgagattccgcccgttacagatagctctcccatgaaattccctagtggacgc
ggtacggtgaatcactttttttggaagacacaactcgccgcccaacagctggtattcgac
gggggaggaagtttagccggcatgcgagccgtaaaacatcaggagaatatgtctttcttt
accttacgcagcacaatcgatagtgttattgcacaggtaaaaactgcattttttcgagtc
attctcgatcgcgctctcgtcgcagttcaggagcaatctgttgccctgctagaagaccag
ttagagagccaaaagaagcactaccaggtgggcaccgttccaaagctggacgtactccag
gctcaggcagccgttgctagtgcggcgtctactctggtgagagtgcagaacaacttgtgc
atctctcagcatcaacttgttaaacttctcggaatgaactatacgaaacacgcagagatt
ccctttcgtgtggtaggtgatctagaggtaaggttctgcgccgtctcttcagaagaagcc
gttcgaataggacttgccagaagtccaattctaaaagcccagcgagagtgcatcctctcg
caagcagcttcggtcagggaagctatttctaataggtatcctaagatcactttaggtggt
ggatatctcgttcaaaacaatacccgctcccatcctaggagagctacgggtggatggttt
ttcggtcttaatgggacttggaacgtctttggtggactcaatgcctatagcagcgaggtc
atacaatctaaggcgttgctggagcagtctagaatcagatacgacaacagtgcacgctct
gttattgccagtattcagcagagcattgccgacttacggcaggctcaagaggttataagg
agccaacaagccaatgtagtgcaggcggcgggaacacttcgactggcccgcgagcaattt
gacagtggcgtaggaacccaactggaagtttttaatgccaagatcaaattactccagtcg
caaaccgccgtcctccaagcacggtttggttatatccaagccctggcacagtatgaagcc
atgctctctatcaatacgcagtataaagagaccgaagccctcttaactaacaaagagcag
caacattttgagaaactaaatagcgccggatag
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