Xenopus tropicalis (tropical clawed frog): 594916
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Entry
594916 CDS
T01011
Symbol
mmp1
Name
(RefSeq) matrix metallopeptidase 1 precursor
KO
K01388
matrix metalloproteinase-1 (interstitial collagenase) [EC:
3.4.24.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03320
PPAR signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
594916 (mmp1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xtr01002
]
594916 (mmp1)
Enzymes [BR:
xtr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.7 interstitial collagenase
594916 (mmp1)
Peptidases and inhibitors [BR:
xtr01002
]
Metallo peptidases
Family M10
594916 (mmp1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Peptidase_M10
Hemopexin
PG_binding_1
Reprolysin_5
Reprolysin_3
Reprolysin_4
DUF4953
Peptidase_M54
Metallopep
Motif
Other DBs
NCBI-GeneID:
594916
NCBI-ProteinID:
NP_001025501
Xenbase:
XB-GENE-485009
UniProt:
Q28IS0
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Position
2:161618455..161627175
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AA seq
467 aa
AA seq
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MKSLLLKLLLCVALAAAFPTDKQDAPTGTSEEMAENYLKKFYSLGTEGGPVGRKKNNRPF
TEKLQQMQKFFGLKVTGILDSKTIEVMQKPRCGVYDVGQYSTVPKSSAWQKTDLTYRIIN
FTPDLPQADVEAAIQRAFKVWSDVTPLTFTRIYNEVSDIEISFSAGDHKDNSPFDGPGGI
LAHAFQPGNGIGGDAHFDEDESWTKTSQLYNLFLVAAHEFGHSLGLSHSTDPGALMYPSY
SSTDPNAFQLPQDDINAIQYLYGKSSNPVQPTGPTTPTICDPNVVFDAVTTLRGELIFFL
NRFIWRKHPQASEAELMFVQTFWPSLPNDIDAAYENPITEQILVFKGAKYTALNGFDVLP
GYPRNIYSLGFPKTVKRIDAAVHIEHLAKTYFFVANKYWSYDEDKQQMDKGFPKLIRDDF
PGIPEKINAALYYRGRLYFFIGRVQFEYNLNTKKIVQVLRSNSWLGC
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcctcctgctgaagctgctactgtgtgtagccctcgccgccgccttccctaca
gataaacaagatgcacccacaggaaccagtgaggagatggctgagaactacttgaagaaa
ttctacagtctcggcaccgaggggggaccagttgggagaaagaaaaacaaccgtcctttc
actgaaaagctccagcagatgcagaagttttttggcttaaaggtgacggggatactggac
agtaagacaatagaagtcatgcagaaacccaggtgtggagtctatgatgttgggcagtac
agcaccgtcccaaaaagttctgcatggcagaaaactgatctgacctacagaatcataaac
ttcactcctgacctgccccaggccgacgtggaggctgccattcaaagagcttttaaagtc
tggagtgatgtgacacctttgaccttcaccagaatctacaatgaagtatcagatatagaa
atctcattttcagctggagatcacaaagacaattctccttttgatggacctggtggcatt
ttagcccacgcctttcagcccggcaacggcattggtggagatgcccattttgacgaagat
gaatcctggaccaagaccagccaattgtacaatctgtttcttgttgctgcccatgaattc
ggacactccttggggctttctcattccactgatccaggtgccttgatgtatccatcttac
tcaagtaccgaccccaatgcatttcagcttcctcaggatgatataaatgctatacagtat
ctatatggaaagtcttccaatccagtccaaccaaccggcccaaccactcctaccatatgt
gatcccaacgtggttttcgatgctgtcaccaccttgagaggagaactgattttctttctt
aacaggtttatatggagaaagcatccccaagcatccgaggctgaactcatgttcgtgcaa
acattctggccatcactgcccaacgatatcgatgctgcctatgaaaatcctataacggag
cagatccttgtgtttaaaggagcaaaatatacagctctcaacggcttcgatgtattgcca
ggctaccccaggaacatctacagcctgggattcccaaagaccgtgaagagaatcgacgca
gctgttcatattgagcacctcgcgaaaacatatttctttgtggctaataaatattggagt
tatgatgaagataaacagcaaatggacaaaggctttccaaaactaataagagacgatttc
ccaggaatccctgagaaaattaatgcagccctttattatagaggtcgcctgtatttcttc
attggacgggtccagtttgaatacaacctcaacactaagaaaattgtacaggttttgaga
agcaacagctggttgggctgctaa
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