Yersinia pestis Nepal516 (biovar Antiqua): YPN_3809
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Entry
YPN_3809 CDS
T00370
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ypn
Yersinia pestis Nepal516 (biovar Antiqua)
Pathway
ypn03030
DNA replication
ypn03410
Base excision repair
ypn03420
Nucleotide excision repair
ypn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPN_3809
03410 Base excision repair
YPN_3809
03420 Nucleotide excision repair
YPN_3809
03430 Mismatch repair
YPN_3809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypn03032
]
YPN_3809
03400 DNA repair and recombination proteins [BR:
ypn03400
]
YPN_3809
Enzymes [BR:
ypn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YPN_3809
DNA replication proteins [BR:
ypn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YPN_3809
DNA repair and recombination proteins [BR:
ypn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YPN_3809
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPN_3809
MMR (mismatch excision repair)
DNA ligase
YPN_3809
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YPN_3809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DUF3701
HHH_5
HHH
RNA_ligase
H2TH_5
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ABG20136
UniProt:
Q1CCZ4
LinkDB
All DBs
Position
complement(4358307..4360010)
Genome browser
AA seq
567 aa
AA seq
DB search
MNILNLKIIMFLLISNTIVVGGAWATSTCPDWPATRIAVEINALEQQLNKWSAAYHQQGH
SPVTDDIYDQLQDKLRVWQSCRGLPDKTESQPIPGKGQFLHPVAHTGLKKLKDETALTRW
MAGRKNLWVQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANAP
ALLTLQGELFLLMDGHQQAKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTM
KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQFWFQAPLPFVTDGVVVRQEEEPAGRYW
QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNIGSVT
RWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAPNWDKFHQLSCFQRLPHGCE
PQFLSRLIWLSGPGGLDIGGIGGGFWQELIHHELINDLVGWLLLTPEQIASIPGIGNARA
EKIYQQFQRAKQQPFSRWLLALGFPQVVSVDAQWQVVLRRSLSEWATMAGIGQMRAKQIK
HFLDHPDVQALADFLSTQKVVGFELTE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaacatactgaatctaaagataataatgttcctattaatatctaacaccatagtggtg
ggcggtgcttgggctacatcaacatgccctgattggcctgcaaccagaatagcggttgag
attaacgcgttggagcaacagttgaataagtggtcggccgcttaccatcagcaaggccat
agcccggtcacggatgacatttatgatcaattacaggacaaattacgtgtgtggcaatcc
tgtagggggttacctgataagacggaaagccagccgatccccggcaaagggcaatttctt
cacccagttgcccataccgggttaaaaaaactcaaagatgaaaccgccctcacaaggtgg
atggcggggcggaaaaatctctgggtacaacccaaggtcgacggtgtggcagtgacactg
gtttatcacggggggaaattggtgcaacttcttagtcgaggaaatggagtaaaaggtcaa
aactggacagaaaaagcgccatttatttctgctattcctcaatatattgcaaatgcgcct
gcactattaacgttgcaaggggagttgtttctactgatggatggccaccagcaagcaaaa
tcgggtggggtgaatgccagatcaacggtggcaggtgcactgatgcgcaaatctccgtct
ccgctattagctcaagttggggtctttatttgggcatggcctgatggcccaacaaccatg
aaagagaaggtggcactattacaggtaatgggttttccttttacagctaaatacagcgag
cccgtcatgtcgcatcttgatgttgtgcaatggcgtcagttctggtttcaagcaccactg
ccgtttgtcaccgatggtgttgtggtcaggcaagaggaggagccagctggtcgttattgg
caggcaacaccggggcagtggtctatggcgtggaagtatccgcctttgcaacacattgcc
gaagtaaaagatattcattttacccttggacgaacgggtaaaggcacggtggtattagag
gttttaccgataaaaattgatgataaatggattcgtcgagtgaatattggttcggtcacc
cgttggaaacaatgggacatcgctcctggtgatcacattacattggcacttgccgggcat
ggtatccctcggctagataacgttgtctggcgagtacaccaacggaatactattacggca
cccaattgggataaattccatcagctcagttgctttcaacgcttaccacatggctgtgaa
cctcagtttttatcccgcttgatatggcttagtggcccaggggggctagatattggcggc
atcggtggcggcttttggcaagagcttattcaccatgagttaattaatgatttggtcgga
tggttattactaacaccagagcaaattgcaagtatccctggaattggaaatgcgcgggct
gaaaaaatttatcaacagtttcaacgggcaaagcagcaacccttttctcgttggttgctg
gcattggggttcccgcaggttgtttccgttgacgcgcagtggcaggttgtattgcgccgg
agtctatctgaatgggccaccatggccgggattgggcaaatgagagcaaaacaaattaag
cattttttggatcaccccgacgtacaagcactggctgatttcttatctactcagaaagtt
gttgggttcgagctcacagagtaa
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