 Aspartic peptidases
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 Cysteine peptidases
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Family C1: papain family
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Family C2: calpain family
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Family C3: picornain family
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Family C4: NIa protease family
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Family C5
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Family C9
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Family C10: streptopain family
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Family C11: clostripain family
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Family C12: ubiquitin C-terminal hydrolase family
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Family C13: legumain family
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Family C14: caspase family
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Family C15: pyroglutamyl peptidase I family
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Family C16
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Family C19: ubiquitin-specific protease family
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Family C25: gingipain family
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Family C26: gamma-glutamyl hydrolase family
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Family C27
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Family C30
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Family C37
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Family C39
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 K12292 comA; ATP-binding cassette, subfamily C, bacterial, competence factor transporting protein [EC:3.4.22.-]
K20344 blpA, lagD; ATP-binding cassette, subfamily C, bacteriocin exporter
K13409 cvaB, mchF, raxB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
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Family C40
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Family C44
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Family C45
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Family C46: hedgehog family
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Family C47: staphopain family
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Family C48: Ulp1 endopeptidase family
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Family C50: separase family
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Family C54: Aut2 peptidase family
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Family C55: YopJ protease family
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Family C56: PfpI endopeptidase family
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Family C57: vaccinia virus I7 peptidase family
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Family C58
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Family C59
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Family C60
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Family C63
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Family C64
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Family C65
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Family C67
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Family C69
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Family C70
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Family C75
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Family C76
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Family C78
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Family C79
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Family C82
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Family C83
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Family C85
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Family C86
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Family C88
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Family C89
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Family C97
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Family C98
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Family C110
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Glutamic peptidases
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Metallo peptidases
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Family M1
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Family M2
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Family M3
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Family M4: thermolysin family
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Family M5: mycolysin family
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Family M6: immune inhibitor A family
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Family M7: snapalysin family
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Family M8: leishmanolysin family
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Family M9
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Family M10
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Family M12: astacin/adamalysin family
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Family M13: neprilysin family
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Family M14: carboxypeptidase A family
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Family M15: zinc D-Ala-D-Ala carboxypeptidase family
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Family M16: pitrilysin family
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Family M17: leucyl aminopeptidase family
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Family M18
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Family M19: membrane dipeptidase family
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Family M20
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Family M23
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Family M24
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Family M26
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Family M27
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Family M28: aminopeptidase Y family
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K01264 APE3; aminopeptidase Y [EC:3.4.11.15]
K05994 E3.4.11.10; bacterial leucyl aminopeptidase [EC:3.4.11.10]
K19702 E3.4.11.24; aminopeptidase S [EC:3.4.11.24]
K09612 iap; alkaline phosphatase isozyme conversion protein [EC:3.4.11.-]
K28939 lap, lpqL; leucyl aminopeptidase [EC:3.4.11.1]
K19701 ywaD; aminopeptidase YwaD [EC:3.4.11.6 3.4.11.10]
K14592 FOLH1, GCPII; glutamate carboxypeptidase II (folate hydrolase 1) [EC:3.4.17.21]
K01301 NAALAD; N-acetylated-alpha-linked acidic dipeptidase [EC:3.4.17.21]
K01302 CPQ; carboxypeptidase Q [EC:3.4.17.-]
K06503 TFRC, CD71; transferrin receptor
K23910 TFR2; transferrin receptor protein 2
K00683 QPCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
K26499 NCLN; BOS complex subunit NCLN
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Family M29: aminopeptidase T family
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Family M32: carboxypeptidase Taq family
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Family M34: anthrax lethal factor family
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Family M35: deuterolysin family
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Family M36: fungalysin family
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Family M38: beta-aspartyl dipeptidase family
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Family M41: FtsH endopeptidase family
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Family M42: glutamyl aminopeptidase family
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Family M43: cytophagalysin family
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Family M44
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Family M48: Ste24 endopeptidase family
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Family M49: dipeptidyl-peptidase III family
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Family M50: S2P protease family
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Family M54
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Family M55: DppA aminopeptidase family
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Family M56
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Family M67
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Family M72
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Family M73
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Family M74
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Family M80
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Family M82
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Family M85
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Family M88
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Family M90
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Family M98
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Asparagine peptide lyases
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Mixed peptidases
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Serine peptidases
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Threonine peptidases
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Peptidases of unknown catalytic type
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Peptidase inhibitors
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Peptidases and Inhibitors