G655_14365 KU domain-containing protein
       G655_14430 ligD; ATP-dependent DNA ligase

K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]

       G655_20325 methylated-DNA--protein-cysteine methyltransferase
       G655_24580 deoxyribodipyrimidine photolyase
       G655_21620 uracil-DNA glycosylase
       G655_04630 3-methyladenine DNA glycosylase
       G655_27095 A/G-specific adenine glycosylase
       G655_07235 endonuclease III
       G655_15810 hypothetical protein
       G655_08945 hypothetical protein
       G655_22630 hypothetical protein
       G655_11045 pyrophosphatase
       G655_07365 hypothetical protein
       G655_25920 hypothetical protein
       G655_28005 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
       G655_06815 methylated-DNA--protein-cysteine methyltransferase
       G655_14545 O6-methylguanine-DNA methyltransferase
       G655_23870 photolyase
       G655_16750 DNA-3-methyladenine glycosidase II
       G655_00050 DNA-3-methyladenine glycosidase I
       G655_01810 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
       G655_03845 nuclease
       G655_12295 exonuclease III
       G655_28060 catabolite repression control protein
       G655_06170 single-stranded-DNA-specific exonuclease RecJ
       G655_17575 ligA; NAD-dependent DNA ligase LigA
       G655_28875 DNA polymerase I
       G655_03535 uvrA; excinuclease ABC subunit A
       G655_09105 excinuclease ABC subunit B
       G655_12075 uvrC; excinuclease ABC subunit C
       G655_28630 uvrD; DNA-dependent helicase II
       G655_03355 rpoB; DNA-directed RNA polymerase subunit beta
       G655_03360 DNA-directed RNA polymerase subunit beta'
       G655_03515 DNA-directed RNA polymerase subunit alpha
       G655_28085 rpoZ; DNA-directed RNA polymerase subunit omega
       G655_09775 transcription-repair coupling factor
       G655_06695 DNA mismatch repair protein MutS
       G655_26075 mutL; DNA mismatch repair protein
       G655_22200 sbcB; exonuclease I
       G655_05825 xseA; exodeoxyribonuclease VII large subunit
       G655_04470 exodeoxyribonuclease VII small subunit
       G655_06595 dnaE; DNA polymerase III subunit alpha
       G655_00010 DNA polymerase III subunit beta
       G655_05545 DNA polymerase III subunit chi
       G655_04730 holA; DNA polymerase III subunit delta
       G655_09985 DNA polymerase III subunit delta'
       G655_16075 DNA polymerase III subunit epsilon
       G655_08640 DNA polymerase III subunit epsilon
       G655_17560 DNA polymerase III subunits gamma and tau
       G655_03545 single-stranded DNA-binding protein
       G655_23450 single-stranded DNA-binding protein
       G655_01285 putative very short patch repair protein
       G655_22035 exodeoxyribonuclease V subunit beta
       G655_22040 exodeoxyribonuclease V subunit gamma
       G655_22030 exodeoxyribonuclease V subunit alpha
       G655_06710 recA; recombinase A
       G655_20515 ruvA; Holliday junction DNA helicase RuvA
       G655_20510 ruvB; Holliday junction DNA helicase RuvB
       G655_20520 ruvC; Holliday junction resolvase
       G655_26600 primosome assembly protein PriA
       G655_11335 hypothetical protein
       G655_22025 putative exonuclease
       G655_22020 exonuclease SbcD
       G655_24290 DNA repair protein RadA
       G655_00015 recF; recombination protein F
       G655_28125 ATP-dependent DNA helicase RecG
       G655_21505 recO; DNA repair protein RecO
       G655_17550 recR; recombination protein RecR
       G655_25095 DNA repair protein RecN
       G655_08475 rdgC; recombination associated protein
       G655_22155 hypothetical protein
       G655_14365 KU domain-containing protein
       G655_14430 ligD; ATP-dependent DNA ligase
       G655_09005 DNA gyrase subunit A
       G655_00020 gyrB; DNA gyrase subunit B
       G655_09730 DNA topoisomerase I subunit omega
       G655_13825 DNA topoisomerase
       G655_23455 topoisomerase I - like protein
       G655_28140 DNA-binding protein
       G655_04980 DNA binding protein
       G655_16135 DNA-binding protein HU
       G655_25595 fis; global DNA-binding transcriptional dual regulator Fis
       G655_11260 ihfA; integration host factor subunit alpha
       G655_09040 ihfB; integration host factor subunit beta
       G655_08040 ATP-dependent DNA helicase RecQ
       G655_20740 DNA polymerase IV
       G655_23615 DNA-directed DNA polymerase
       G655_23620 putative prophage repressor
       G655_09750 LexA repressor
       G655_15690 DNA polymerase II
       G655_22005 hypothetical protein
       G655_22010 hypothetical protein
       G655_22015 dnaE2; error-prone DNA polymerase
       G655_06715 recX; recombination regulator RecX
       G655_27880 ATP-dependent DNA helicase Rep
       G655_20060 dinG; ATP-dependent DNA helicase DinG
       G655_08430 putative ATP-dependent DNA helicase
       G655_19470 ribonucleotide-diphosphate reductase subunit alpha
       G655_28895 NrdJa
       G655_19475 ribonucleotide-diphosphate reductase subunit beta

K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]