| T00007 | eco | Escherichia coli K-12 MG1655 |
| T00068 | ecj | Escherichia coli K-12 W3110 |
| T00666 | ecd | Escherichia coli K-12 DH10B |
| T00913 | ebw | Escherichia coli K-12 BW2952 |
| T02541 | ecok | Escherichia coli K-12 MDS42 |
| T09611 | ecoc | Escherichia coli K-12 C3026 |
| T00044 | ece | Escherichia coli O157:H7 EDL933 (EHEC) |
| T00048 | ecs | Escherichia coli O157:H7 Sakai (EHEC) |
| T00778 | ecf | Escherichia coli O157:H7 EC4115 (EHEC) |
| T00949 | etw | Escherichia coli O157:H7 TW14359 (EHEC) |
| T02122 | elx | Escherichia coli O157:H7 Xuzhou21 (EHEC) |
| T01097 | eoi | Escherichia coli O111:H- 11128 (EHEC) |
| T01098 | eoj | Escherichia coli O26:H11 11368 (EHEC) |
| T01096 | eoh | Escherichia coli O103:H2 12009 (EHEC) |
| T03010 | ecoo | Escherichia coli O145:H28 RM13514 (EHEC) |
| T03011 | ecoh | Escherichia coli O145:H28 RM13516 (EHEC) |
| T02257 | esl | Escherichia coli O104:H4 2011C-3493 (EAEC) |
| T02256 | eso | Escherichia coli O104:H4 2009EL-2071 (EAEC) |
| T02316 | esm | Escherichia coli O104:H4 2009EL-2050 (EAEC) |
| T00826 | eck | Escherichia coli 55989 (EAEC) |
| T00796 | ecg | Escherichia coli O127:H6 E2348/69 (EPEC) |
| T01190 | eok | Escherichia coli O55:H7 CB9615 (EPEC) |
| T02066 | elr | Escherichia coli O55:H7 RM12579 (EPEC) |
| T02069 | elh | Escherichia coli O78:H11:K80 H10407 (ETEC) |
| T00590 | ecw | Escherichia coli O139:H28 E24377A (ETEC) |
| T02001 | eun | Escherichia coli UMNK88 (ETEC, porcine) |
| T00373 | ecp | Escherichia coli O6:K15:H31 536 (UPEC) |
| T01998 | ena | Escherichia coli NA114 (UPEC) |
| T04373 | ecos | Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC) |
| T00425 | ecv | Escherichia coli APEC O1 (APEC) |
| T02445 | ecoa | Escherichia coli APEC O78 (APEC) |
| T00591 | ecx | Escherichia coli O9 HS (commensal) |
| T00672 | ecm | Escherichia coli SMS-3-5 (environmental) |
| T00784 | ecy | Escherichia coli O152:H28 SE11 (commensal) |
| T00828 | ecr | Escherichia coli O8 IAI1 (commensal) |
| T00827 | ecq | Escherichia coli O81 ED1a (commensal) |
| T00831 | eum | Escherichia coli O17:K52:H18 UMN026 (ExPEC) |
| T00829 | ect | Escherichia coli O7:K1 IAI39 (ExPEC) |
| T01999 | eoc | Escherichia coli O7:K1 CE10 |
| T00944 | ebr | Escherichia coli B REL606 |
| T09610 | ecob | Escherichia coli B C3029 |
| T00931 | ebl | Escherichia coli BL21(DE3) |
| T02096 | ebe | Escherichia coli BL21(DE3) |
| T00939 | ebd | Escherichia coli BL21-Gold(DE3)pLysS AG |
| T00338 | eci | Escherichia coli O18:K1:H7 UTI89 (UPEC) |
| T01997 | eih | Escherichia coli O18:K1:H7 IHE3034 (ExPEC) |
| T00830 | ecz | Escherichia coli O45:K1:H7 S88 (ExPEC) |
| T00106 | ecc | Escherichia coli O6:K2:H1 CFT073 (UPEC) |
| T02067 | elo | Escherichia coli O44:H18 042 (EAEC) |
| T02068 | eln | Escherichia coli O83:H1 NRG 857C (AIEC) |
| T02077 | ese | Escherichia coli O150:H5 SE15 (commensal) |
| T00697 | ecl | Escherichia coli ATCC 8739 |
| T01718 | eko | Escherichia coli KO11FL |
| T02104 | ekf | Escherichia coli KO11FL |
| T01995 | eab | Escherichia coli ABU 83972 |
| T01996 | edh | Escherichia coli DH1 |
| T02102 | edj | Escherichia coli DH1 |
| T02000 | elu | Escherichia coli UM146 |
| T02002 | elw | Escherichia coli W |
| T02101 | ell | Escherichia coli W |
| T02003 | elc | Escherichia coli clone D i14 |
| T02004 | eld | Escherichia coli clone D i2 |
| T02030 | elp | Escherichia coli P12b |
| T00854 | elf | Escherichia coli LF82 |
| T02846 | ecol | Escherichia coli LY180 |
| T02847 | ecoi | Escherichia coli O18:K1 PMV-1 (ExPEC) |
| T02896 | ecoj | Escherichia coli JJ1886 |
Species: Escherichia coli