| T00027 | nme | Neisseria meningitidis MC58 (serogroup B) |
| T01932 | nmp | Neisseria meningitidis alpha710 (serogroup B) |
| T01946 | nmh | Neisseria meningitidis H44/76 (serogroup B) |
| T01929 | nmd | Neisseria meningitidis G2136 (serogroup B) |
| T01930 | nmm | Neisseria meningitidis M01-240149 (serogroup B) |
| T01947 | nms | Neisseria meningitidis M01-240355 (serogroup B) |
| T01948 | nmq | Neisseria meningitidis M04-240196 (serogroup B) |
| T01949 | nmz | Neisseria meningitidis NZ-05/33 (serogroup B) |
| T00031 | nma | Neisseria meningitidis Z2491 (serogroup A) |
| T01931 | nmw | Neisseria meningitidis WUE 2594 (serogroup A) |
| T03438 | nmx | Neisseria meningitidis 510612 (serogroup A) |
| T00458 | nmc | Neisseria meningitidis FAM18 (serogroup C) |
| T00633 | nmn | Neisseria meningitidis 053442 (serogroup C) |
| T01928 | nmt | Neisseria meningitidis 8013 (serogroup C) |
| T00954 | nmi | Neisseria meningitidis alpha14 (cnl strain) |
| T00237 | ngo | Neisseria gonorrhoeae FA 1090 |
| T00728 | ngk | Neisseria gonorrhoeae NCCP11945 |
| T01368 | nla | Neisseria lactamica |
| T03569 | nel | Neisseria elongata |
| T04355 | nwe | Neisseria weaveri |
| T04958 | nsi | Neisseria mucosa FDAARGOS_260 |
| T05436 | nmj | Neisseria mucosa ATCC 19696 |
| T05718 | nei | Neisseria chenwenguii |
| T05913 | nek | Neisseria sp. KEM232 |
| T06171 | nfv | Neisseria flavescens |
| T06236 | nsf | Neisseria subflava |
| T06266 | nzl | Neisseria zalophi |
| T06425 | naq | Neisseria animalis |
| T06557 | nbl | Neisseria brasiliensis |
| T06683 | nzo | Neisseria zoodegmatis |
| T06799 | nci | Neisseria canis |
| T06828 | ncz | Neisseria cinerea |
| T06907 | nani | Neisseria animaloris |
| T06984 | nbc | Neisseria bacilliformis |
| T07067 | nwd | Neisseria wadsworthii |
| T07084 | nsg | Neisseria shayeganii |
| T07094 | nmus | Neisseria musculi |
| T07263 | nsc | Neisseria sicca |
| T07577 | npf | Neisseria perflava |
| T07671 | ndn | Neisseria dentiae |
| T07968 | nwx | Neisseria weixii |
| T08094 | ndu | Neisseria dumasiana |
| T08172 | naw | Neisseria arctica |
| T08217 | nmb | Neisseria macacae |
| T09339 | nls | Neisseria lisongii |
Pangenome: Neisseria