KEGG pathway modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:T30078_00010 T30078_01200 T30078_01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:T30078_00010 T30078_01200 T30078_01230 T30078_01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:T30078_00010 T30078_00020 T30078_01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:T30078_00010 T30078_00020 T30078_00620 T30078_00785 T30078_01200 T30078_01210 T30078_01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:T30078_00020 T30078_01200 T30078_01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:T30078_00020 T30078_01200 T30078_01210 T30078_01230 T30078_01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:T30078_00020 T30078_01200 T30078_01210 T30078_01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:T30078_00030 T30078_01200 T30078_01100 T30078_01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:T30078_00030 T30078_01200 T30078_01100 T30078_01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:T30078_00030 T30078_01200 T30078_01230 T30078_01100 T30078_01120]
M00580 Pentose phosphate pathway, archaea, fructose-6P => ribose-5P [PATH:T30078_00030 T30078_01200 T30078_01230 T30078_01100 T30078_01120]
M00005 PRPP biosynthesis, ribose-5P => PRPP [PATH:T30078_00030 T30078_00230 T30078_01200 T30078_01230 T30078_01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:T30078_00030 T30078_01200 T30078_01100 T30078_01120]

Other carbohydrate metabolism
M00631 Galacturonate degradation, bacteria, galacturonate => pyruvate + glyceraldehyde-3P [PATH:T30078_00040 T30078_00030 T30078_01100 T30078_01120]
M00061 Glucuronate degradation, glucuronate => pyruvate + glyceraldehyde-3P [PATH:T30078_00040 T30078_00030 T30078_01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:T30078_00052 T30078_01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:T30078_00500 T30078_01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:T30078_00500 T30078_01100]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:T30078_00620 T30078_00710 T30078_01200 T30078_01100 T30078_01120]
M00169 CAM (Crassulacean acid metabolism), light [PATH:T30078_00620 T30078_00710 T30078_01200 T30078_01100 T30078_01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:T30078_00430 T30078_00620 T30078_00720 T30078_01200 T30078_01100 T30078_01120]

Methane metabolism
M00345 Formaldehyde assimilation, ribulose monophosphate pathway [PATH:T30078_00030 T30078_00680 T30078_01200 T30078_01230 T30078_01100 T30078_01120]

Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:T30078_00190 T30078_01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:T30078_00190 T30078_00195 T30078_01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:T30078_00061 T30078_01212 T30078_01100]
M00083 Fatty acid biosynthesis, elongation [PATH:T30078_00061 T30078_01212 T30078_01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:T30078_00061 T30078_00071 T30078_01212 T30078_01100]

Sterol biosynthesis
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:T30078_00564 T30078_01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:T30078_00230 T30078_01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:T30078_00230 T30078_01232 T30078_01240 T30078_01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:T30078_00230 T30078_01232 T30078_01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:T30078_00230 T30078_00240 T30078_01232 T30078_01100]

Pyrimidine metabolism
M00051 De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:T30078_00240 T30078_01240 T30078_01100]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:T30078_00240 T30078_01232 T30078_01240 T30078_01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:T30078_00240 T30078_01232 T30078_01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:T30078_00260 T30078_00680 T30078_01200 T30078_01230 T30078_01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:T30078_00260 T30078_01230 T30078_01100 T30078_01110]
M00621 Glycine cleavage system [PATH:T30078_00260 T30078_00630 T30078_00670 T30078_00785 T30078_01200 T30078_01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:T30078_00270 T30078_00920 T30078_01320 T30078_01200 T30078_01230 T30078_01100 T30078_01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:T30078_00270 T30078_01230 T30078_01100]
M00035 Methionine degradation [PATH:T30078_00270 T30078_00670 T30078_01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:T30078_00290 T30078_00770 T30078_01210 T30078_01230 T30078_01100 T30078_01110]
M00535 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate [PATH:T30078_00290 T30078_00660 T30078_01210 T30078_01230 T30078_01100]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:T30078_00290 T30078_01230 T30078_01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:T30078_00290 T30078_01210 T30078_01230 T30078_01100 T30078_01110]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:T30078_00300 T30078_01230 T30078_01100]
M00526 Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH:T30078_00300 T30078_01230 T30078_01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:T30078_00300 T30078_01230 T30078_01100 T30078_01110]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:T30078_00220 T30078_01210 T30078_01230 T30078_01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:T30078_00220 T30078_01230 T30078_01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:T30078_00330 T30078_01230 T30078_01100]
M00970 Proline degradation, proline => glutamate [PATH:T30078_00330 T30078_01100]
M00972 Proline metabolism [PATH:T30078_00330 T30078_01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:T30078_00330 T30078_01100]
M00134 Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:T30078_00330 T30078_01100]
M00135 GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:T30078_00330 T30078_01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:T30078_00340 T30078_01230 T30078_01100 T30078_01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:T30078_00340 T30078_01100]

Aromatic amino acid metabolism
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:T30078_00400 T30078_01230 T30078_01100 T30078_01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:T30078_00400 T30078_01230 T30078_01100 T30078_01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:T30078_00400 T30078_01230 T30078_01100]

Other amino acid metabolism
M00027 GABA (gamma-Aminobutyrate) shunt [PATH:T30078_00250 T30078_00650 T30078_01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:T30078_00520 T30078_01250 T30078_01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:T30078_00520 T30078_01250 T30078_01100]
M01004 UDP-Galf biosynthesis, UDP-Glc => UDP-Galf [PATH:T30078_00520 T30078_00052 T30078_01250 T30078_01100]
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH:T30078_00520 T30078_00053 T30078_01250 T30078_01100]
M00554 UDP-Gal biosynthesis, Gal => UDP-Gal [PATH:T30078_00520 T30078_00052 T30078_01250 T30078_01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:T30078_00520 T30078_00051 T30078_01250 T30078_01100]
M01015 GDP-Man biosynthesis, Man => GDP-Man [PATH:T30078_00520 T30078_00051 T30078_01250 T30078_01100]
M01001 GDP-L-Fuc biosynthesis, L-Fuc => GDP-L-Fuc [PATH:T30078_00520 T30078_01250 T30078_01100]
M01036 UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA [PATH:T30078_00541 T30078_01250 T30078_01100]
M00923 UDP-L-FucNAc biosynthesis, UDP-GlcNAc => UDP-L-FucNAc [PATH:T30078_00541 T30078_01250 T30078_01100]
M01011 CMP-Leg5Ac7Ac biosynthesis, UDP-BacNAc4NAc => CMP-Leg5Ac7Ac [PATH:T30078_00541 T30078_01250 T30078_01100]
M00063 CMP-KDO biosynthesis, ribulose-5P => CMP-KDO [PATH:T30078_00541 T30078_01250 T30078_01100]
M00922 CMP-Neu5Ac biosynthesis, bacteria, UDP-GlcNAc => CMP-Neu5Ac [PATH:T30078_00541 T30078_01250 T30078_01100]
M01014 UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA [PATH:T30078_00541 T30078_01250 T30078_01100]
M00064 ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep [PATH:T30078_00541 T30078_01250 T30078_01100]
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:T30078_00521 T30078_00523 T30078_00541 T30078_01250 T30078_01100 T30078_01110]
M01006 GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N [PATH:T30078_00520 T30078_00541 T30078_01250 T30078_01100]
M01016 GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc [PATH:T30078_00541 T30078_00051 T30078_01250 T30078_01100]
M01018 GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha [PATH:T30078_00541 T30078_00051 T30078_01250 T30078_01100]

Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00896 Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP [PATH:T30078_00730 T30078_01240 T30078_01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:T30078_00730 T30078_01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:T30078_00740 T30078_01240 T30078_01100 T30078_01110]
M00916 Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:T30078_00750 T30078_01240 T30078_01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:T30078_00760 T30078_01240 T30078_01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:T30078_00770 T30078_01240 T30078_01100 T30078_01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:T30078_00770 T30078_01240 T30078_01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:T30078_00780 T30078_01240 T30078_01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:T30078_00780 T30078_01240 T30078_01100]
M00577 Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin [PATH:T30078_00780 T30078_01240 T30078_01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:T30078_00785 T30078_01240 T30078_01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:T30078_00790 T30078_00670 T30078_01240 T30078_01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:T30078_00790 T30078_01100]
M00140 C1-unit interconversion, prokaryotes [PATH:T30078_00670 T30078_01240 T30078_01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:T30078_00860 T30078_01240 T30078_01100 T30078_01110]
M00924 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:T30078_00860 T30078_01240 T30078_01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:T30078_00860 T30078_01240 T30078_01100]
M00930 Menaquinone biosynthesis, futalosine pathway [PATH:T30078_00130 T30078_01240 T30078_01100]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Biosynthesis of other compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:T30078_01501]
M00652 Vancomycin resistance, D-Ala-D-Ser type [PATH:T30078_01502 T30078_02020]

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity