KEGG pathway modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:T30144_00010 T30144_01200 T30144_01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:T30144_00010 T30144_01200 T30144_01230 T30144_01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:T30144_00010 T30144_00020 T30144_01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:T30144_00010 T30144_00020 T30144_00620 T30144_00785 T30144_01200 T30144_01210 T30144_01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:T30144_00020 T30144_01200 T30144_01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:T30144_00020 T30144_01200 T30144_01210 T30144_01230 T30144_01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:T30144_00020 T30144_01200 T30144_01210 T30144_01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:T30144_00030 T30144_01200 T30144_01100 T30144_01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:T30144_00030 T30144_01200 T30144_01100 T30144_01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:T30144_00030 T30144_01200 T30144_01230 T30144_01100 T30144_01120]
M00005 PRPP biosynthesis, ribose-5P => PRPP [PATH:T30144_00030 T30144_00230 T30144_01200 T30144_01230 T30144_01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:T30144_00030 T30144_01200 T30144_01100 T30144_01120]

Other carbohydrate metabolism
M00061 Glucuronate degradation, glucuronate => pyruvate + glyceraldehyde-3P [PATH:T30144_00040 T30144_00030 T30144_01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:T30144_00052 T30144_01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:T30144_00053 T30144_01100 T30144_01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:T30144_00500 T30144_01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:T30144_00500 T30144_01100]
M00565 Trehalose biosynthesis, D-glucose-1P => trehalose [PATH:T30144_00500 T30144_01100 T30144_01110]
M00012 Glyoxylate cycle [PATH:T30144_00630 T30144_01200 T30144_01100 T30144_01110]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:T30144_00620 T30144_00710 T30144_01200 T30144_01100 T30144_01120]
M00169 CAM (Crassulacean acid metabolism), light [PATH:T30144_00620 T30144_00710 T30144_01200 T30144_01100 T30144_01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:T30144_00430 T30144_00620 T30144_00720 T30144_01200 T30144_01100 T30144_01120]

Methane metabolism
Nitrogen metabolism
M00530 Dissimilatory nitrate reduction, nitrate => ammonia [PATH:T30144_00910 T30144_01310 T30144_01100 T30144_01120]

Sulfur metabolism
Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:T30144_00190 T30144_01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:T30144_00190 T30144_01100]
M00150 Fumarate reductase, prokaryotes [PATH:T30144_00190 T30144_01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:T30144_00190 T30144_01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:T30144_00190 T30144_01100]
M00417 Cytochrome o ubiquinol oxidase [PATH:T30144_00190 T30144_01100]
M00156 Cytochrome c oxidase, cbb3-type [PATH:T30144_00190 T30144_01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:T30144_00190 T30144_00195 T30144_01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:T30144_00061 T30144_01212 T30144_01100]
M00083 Fatty acid biosynthesis, elongation [PATH:T30144_00061 T30144_01212 T30144_01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:T30144_00061 T30144_00071 T30144_01212 T30144_01100]

Sterol biosynthesis
Lipid metabolism
M00091 Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:T30144_00564 T30144_01100]
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:T30144_00564 T30144_01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:T30144_00230 T30144_01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:T30144_00230 T30144_01232 T30144_01240 T30144_01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:T30144_00230 T30144_01232 T30144_01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:T30144_00230 T30144_00240 T30144_01232 T30144_01100]

Pyrimidine metabolism
M00051 De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:T30144_00240 T30144_01240 T30144_01100]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:T30144_00240 T30144_01232 T30144_01240 T30144_01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:T30144_00240 T30144_01232 T30144_01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:T30144_00260 T30144_00680 T30144_01200 T30144_01230 T30144_01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:T30144_00260 T30144_01230 T30144_01100 T30144_01110]
M00621 Glycine cleavage system [PATH:T30144_00260 T30144_00630 T30144_00670 T30144_00785 T30144_01200 T30144_01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:T30144_00260 T30144_00670 T30144_01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:T30144_00270 T30144_00920 T30144_01320 T30144_01200 T30144_01230 T30144_01100 T30144_01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:T30144_00270 T30144_01230 T30144_01100]
M00035 Methionine degradation [PATH:T30144_00270 T30144_00670 T30144_01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:T30144_00290 T30144_00770 T30144_01210 T30144_01230 T30144_01100 T30144_01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:T30144_00290 T30144_01230 T30144_01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:T30144_00290 T30144_01210 T30144_01230 T30144_01100 T30144_01110]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:T30144_00300 T30144_01230 T30144_01100]
M00525 Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:T30144_00300 T30144_01230 T30144_01100]
M00526 Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH:T30144_00300 T30144_01230 T30144_01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:T30144_00300 T30144_01230 T30144_01100 T30144_01110]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:T30144_00220 T30144_01210 T30144_01230 T30144_01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:T30144_00220 T30144_01230 T30144_01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:T30144_00330 T30144_01230 T30144_01100]
M00970 Proline degradation, proline => glutamate [PATH:T30144_00330 T30144_01100]
M00972 Proline metabolism [PATH:T30144_00330 T30144_01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:T30144_00330 T30144_01100]
M00134 Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:T30144_00330 T30144_01100]
M00135 GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:T30144_00330 T30144_01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:T30144_00340 T30144_01230 T30144_01100 T30144_01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:T30144_00340 T30144_01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:T30144_00400 T30144_01230 T30144_01100 T30144_01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:T30144_00400 T30144_01230 T30144_01100 T30144_01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:T30144_00400 T30144_01230 T30144_01100 T30144_01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:T30144_00400 T30144_01230 T30144_01100]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:T30144_00400 T30144_01230 T30144_01100 T30144_01110]

Other amino acid metabolism
M00027 GABA (gamma-Aminobutyrate) shunt [PATH:T30144_00250 T30144_00650 T30144_01100]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:T30144_00480 T30144_01240 T30144_01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00996 UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc [PATH:T30144_00520 T30144_01250 T30144_01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:T30144_00520 T30144_01250 T30144_01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:T30144_00520 T30144_01250 T30144_01100]
M01004 UDP-Galf biosynthesis, UDP-Glc => UDP-Galf [PATH:T30144_00520 T30144_00052 T30144_01250 T30144_01100]
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH:T30144_00520 T30144_00053 T30144_01250 T30144_01100]
M00554 UDP-Gal biosynthesis, Gal => UDP-Gal [PATH:T30144_00520 T30144_00052 T30144_01250 T30144_01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:T30144_00520 T30144_00051 T30144_01250 T30144_01100]
M01036 UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA [PATH:T30144_00541 T30144_01250 T30144_01100]
M01035 UDP-ManNAc3NAcA biosynthesis, UDP-GlcNAc => UDP-ManNAc3NAcA [PATH:T30144_00541 T30144_01250 T30144_01100]
M01009 UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc [PATH:T30144_00541 T30144_01250 T30144_01100]
M01011 CMP-Leg5Ac7Ac biosynthesis, UDP-BacNAc4NAc => CMP-Leg5Ac7Ac [PATH:T30144_00541 T30144_01250 T30144_01100]
M00063 CMP-KDO biosynthesis, ribulose-5P => CMP-KDO [PATH:T30144_00541 T30144_01250 T30144_01100]
M01014 UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA [PATH:T30144_00541 T30144_01250 T30144_01100]
M00064 ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep [PATH:T30144_00541 T30144_01250 T30144_01100]
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:T30144_00521 T30144_00523 T30144_00541 T30144_01250 T30144_01100 T30144_01110]
M01025 dTDP-D-Fuc4NAc biosynthesis, Glc-1P => dTDP-D-Fuc4NAc [PATH:T30144_00541 T30144_01250 T30144_01100]
M01006 GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N [PATH:T30144_00520 T30144_00541 T30144_01250 T30144_01100]
M01016 GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc [PATH:T30144_00541 T30144_00051 T30144_01250 T30144_01100]
M01018 GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha [PATH:T30144_00541 T30144_00051 T30144_01250 T30144_01100]

Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
M00060 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:T30144_00540 T30144_01100]

Other polysaccharide metabolism
M00888 Galactofuranan biosynthesis, decaprenyl phosphate + UDP-GlcNAc (+ dTDP-Rha/UDP-Galf) => GL-5 [PATH:T30144_00572 T30144_01100]

Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:T30144_00730 T30144_01240 T30144_01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:T30144_00730 T30144_01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:T30144_00740 T30144_01240 T30144_01100 T30144_01110]
M00916 Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:T30144_00750 T30144_01240 T30144_01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:T30144_00760 T30144_01240 T30144_01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:T30144_00770 T30144_01240 T30144_01100 T30144_01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:T30144_00770 T30144_01240 T30144_01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:T30144_00780 T30144_01240 T30144_01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:T30144_00780 T30144_01240 T30144_01100]
M00577 Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin [PATH:T30144_00780 T30144_01240 T30144_01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:T30144_00785 T30144_01240 T30144_01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:T30144_00790 T30144_00670 T30144_01240 T30144_01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:T30144_00790 T30144_01240 T30144_01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:T30144_00790 T30144_01100]
M00140 C1-unit interconversion, prokaryotes [PATH:T30144_00670 T30144_01240 T30144_01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:T30144_00860 T30144_01240 T30144_01100 T30144_01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:T30144_00860 T30144_01240 T30144_01100 T30144_01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:T30144_00860 T30144_01240 T30144_01100]
M00924 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:T30144_00860 T30144_01240 T30144_01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:T30144_00860 T30144_01240 T30144_01100]
M00989 Ubiquinone biosynthesis, O2-independent, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:T30144_00130 T30144_01240 T30144_01100 T30144_01110]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:T30144_00130 T30144_01240 T30144_01100 T30144_01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00095 C5 isoprenoid biosynthesis, mevalonate pathway [PATH:T30144_00900 T30144_01100 T30144_01110]
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:T30144_00900 T30144_01100 T30144_01110]

Terpenoid biosynthesis
M00097 Lycopene biosynthesis, geranylgeranyl-PP => lycopene [PATH:T30144_00906 T30144_01100 T30144_01110]

Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Biosynthesis of other compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity