KEGG pathway modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:T30279_00010 T30279_01200 T30279_01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:T30279_00010 T30279_01200 T30279_01230 T30279_01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:T30279_00010 T30279_00020 T30279_01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:T30279_00010 T30279_00020 T30279_00620 T30279_00785 T30279_01200 T30279_01210 T30279_01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:T30279_00020 T30279_01200 T30279_01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:T30279_00020 T30279_01200 T30279_01210 T30279_01230 T30279_01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:T30279_00020 T30279_01200 T30279_01210 T30279_01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:T30279_00030 T30279_01200 T30279_01100 T30279_01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:T30279_00030 T30279_01200 T30279_01100 T30279_01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:T30279_00030 T30279_01200 T30279_01230 T30279_01100 T30279_01120]
M00005 PRPP biosynthesis, ribose-5P => PRPP [PATH:T30279_00030 T30279_00230 T30279_01200 T30279_01230 T30279_01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:T30279_00030 T30279_01200 T30279_01100 T30279_01120]

Other carbohydrate metabolism
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:T30279_00052 T30279_01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:T30279_00053 T30279_01100 T30279_01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:T30279_00500 T30279_01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:T30279_00500 T30279_01100]
M00982 Methylcitrate cycle [PATH:T30279_00640 T30279_00020 T30279_01200 T30279_01100 T30279_01120]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:T30279_00620 T30279_00710 T30279_01200 T30279_01100 T30279_01120]
M00169 CAM (Crassulacean acid metabolism), light [PATH:T30279_00620 T30279_00710 T30279_01200 T30279_01100 T30279_01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:T30279_00430 T30279_00620 T30279_00720 T30279_01200 T30279_01100 T30279_01120]

Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:T30279_00190 T30279_01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:T30279_00190 T30279_01100]
M00150 Fumarate reductase, prokaryotes [PATH:T30279_00190 T30279_01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:T30279_00190 T30279_01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:T30279_00190 T30279_00195 T30279_01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:T30279_00061 T30279_01212 T30279_01100]
M00083 Fatty acid biosynthesis, elongation [PATH:T30279_00061 T30279_01212 T30279_01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:T30279_00061 T30279_00071 T30279_01212 T30279_01100]

Sterol biosynthesis
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:T30279_00564 T30279_01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:T30279_00230 T30279_01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:T30279_00230 T30279_01232 T30279_01240 T30279_01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:T30279_00230 T30279_01232 T30279_01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:T30279_00230 T30279_00240 T30279_01232 T30279_01100]

Pyrimidine metabolism
M00051 De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:T30279_00240 T30279_01240 T30279_01100]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:T30279_00240 T30279_01232 T30279_01240 T30279_01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:T30279_00240 T30279_01232 T30279_01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:T30279_00260 T30279_00680 T30279_01200 T30279_01230 T30279_01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:T30279_00260 T30279_01230 T30279_01100 T30279_01110]
M00621 Glycine cleavage system [PATH:T30279_00260 T30279_00630 T30279_00670 T30279_00785 T30279_01200 T30279_01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:T30279_00270 T30279_00920 T30279_01320 T30279_01200 T30279_01230 T30279_01100 T30279_01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:T30279_00270 T30279_01230 T30279_01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:T30279_00290 T30279_00770 T30279_01210 T30279_01230 T30279_01100 T30279_01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:T30279_00290 T30279_01230 T30279_01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:T30279_00290 T30279_01210 T30279_01230 T30279_01100 T30279_01110]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:T30279_00300 T30279_01230 T30279_01100]
M00525 Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:T30279_00300 T30279_01230 T30279_01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:T30279_00220 T30279_01210 T30279_01230 T30279_01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:T30279_00220 T30279_01230 T30279_01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:T30279_00330 T30279_01230 T30279_01100]
M00970 Proline degradation, proline => glutamate [PATH:T30279_00330 T30279_01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:T30279_00330 T30279_01100]

Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:T30279_00400 T30279_01230 T30279_01100 T30279_01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:T30279_00400 T30279_01230 T30279_01100 T30279_01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:T30279_00400 T30279_01230 T30279_01100 T30279_01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:T30279_00400 T30279_01230 T30279_01100]

Other amino acid metabolism
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:T30279_00480 T30279_01240 T30279_01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00996 UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc [PATH:T30279_00520 T30279_01250 T30279_01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:T30279_00520 T30279_01250 T30279_01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:T30279_00520 T30279_01250 T30279_01100]
M01004 UDP-Galf biosynthesis, UDP-Glc => UDP-Galf [PATH:T30279_00520 T30279_00052 T30279_01250 T30279_01100]
M00554 UDP-Gal biosynthesis, Gal => UDP-Gal [PATH:T30279_00520 T30279_00052 T30279_01250 T30279_01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:T30279_00520 T30279_00051 T30279_01250 T30279_01100]
M00923 UDP-L-FucNAc biosynthesis, UDP-GlcNAc => UDP-L-FucNAc [PATH:T30279_00541 T30279_01250 T30279_01100]
M00063 CMP-KDO biosynthesis, ribulose-5P => CMP-KDO [PATH:T30279_00541 T30279_01250 T30279_01100]
M00064 ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep [PATH:T30279_00541 T30279_01250 T30279_01100]
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:T30279_00521 T30279_00523 T30279_00541 T30279_01250 T30279_01100 T30279_01110]

Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
M00060 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:T30279_00540 T30279_01100]

Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:T30279_00730 T30279_01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:T30279_00740 T30279_01240 T30279_01100 T30279_01110]
M00916 Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:T30279_00750 T30279_01240 T30279_01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:T30279_00760 T30279_01240 T30279_01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:T30279_00770 T30279_01240 T30279_01100 T30279_01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:T30279_00770 T30279_01240 T30279_01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:T30279_00780 T30279_01240 T30279_01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:T30279_00780 T30279_01240 T30279_01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:T30279_00785 T30279_01240 T30279_01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:T30279_00790 T30279_00670 T30279_01240 T30279_01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:T30279_00790 T30279_01240 T30279_01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:T30279_00790 T30279_01100]
M00140 C1-unit interconversion, prokaryotes [PATH:T30279_00670 T30279_01240 T30279_01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:T30279_00860 T30279_01240 T30279_01100 T30279_01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:T30279_00860 T30279_01240 T30279_01100 T30279_01110]
M00989 Ubiquinone biosynthesis, O2-independent, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:T30279_00130 T30279_01240 T30279_01100 T30279_01110]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:T30279_00130 T30279_01240 T30279_01100 T30279_01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:T30279_00900 T30279_01100 T30279_01110]

Terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Biosynthesis of other compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity