KEGG pathway modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:T30728_00010 T30728_01200 T30728_01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:T30728_00010 T30728_01200 T30728_01230 T30728_01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:T30728_00010 T30728_00020 T30728_01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:T30728_00010 T30728_00020 T30728_00620 T30728_00785 T30728_01200 T30728_01210 T30728_01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:T30728_00020 T30728_01200 T30728_01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:T30728_00020 T30728_01200 T30728_01210 T30728_01230 T30728_01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:T30728_00020 T30728_01200 T30728_01210 T30728_01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:T30728_00030 T30728_01200 T30728_01100 T30728_01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:T30728_00030 T30728_01200 T30728_01100 T30728_01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:T30728_00030 T30728_01200 T30728_01230 T30728_01100 T30728_01120]
M00005 PRPP biosynthesis, ribose-5P => PRPP [PATH:T30728_00030 T30728_00230 T30728_01200 T30728_01230 T30728_01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:T30728_00030 T30728_01200 T30728_01100 T30728_01120]

Other carbohydrate metabolism
M00061 Glucuronate degradation, glucuronate => pyruvate + glyceraldehyde-3P [PATH:T30728_00040 T30728_00030 T30728_01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:T30728_00052 T30728_01100]
M00552 Galactonate degradation, De Ley-Doudoroff pathway, galactonate => glycerate-3P [PATH:T30728_00052 T30728_01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:T30728_00500 T30728_01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:T30728_00500 T30728_01100]
M00012 Glyoxylate cycle [PATH:T30728_00630 T30728_01200 T30728_01100 T30728_01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:T30728_00280 T30728_00630 T30728_00640 T30728_01200 T30728_01100]
M00982 Methylcitrate cycle [PATH:T30728_00640 T30728_00020 T30728_01200 T30728_01100 T30728_01120]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH:T30728_00562 T30728_01100]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:T30728_00620 T30728_00710 T30728_01200 T30728_01100 T30728_01120]
M00169 CAM (Crassulacean acid metabolism), light [PATH:T30728_00620 T30728_00710 T30728_01200 T30728_01100 T30728_01120]
M00170 C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:T30728_00710 T30728_01200 T30728_01100 T30728_01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:T30728_00430 T30728_00620 T30728_00720 T30728_01200 T30728_01100 T30728_01120]

Methane metabolism
M00346 Formaldehyde assimilation, serine pathway [PATH:T30728_00680 T30728_01200 T30728_01100 T30728_01120]

Nitrogen metabolism
Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:T30728_00920 T30728_01320 T30728_01100 T30728_01120]
M00595 Sulfur oxidation, SOX system, thiosulfate => sulfate [PATH:T30728_00920 T30728_01320 T30728_01100 T30728_01120]

Photosynthesis
M00597 Anoxygenic photosystem II

ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:T30728_00190 T30728_01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:T30728_00190 T30728_01100]
M00150 Fumarate reductase, prokaryotes [PATH:T30728_00190 T30728_01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:T30728_00190 T30728_01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:T30728_00190 T30728_01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:T30728_00190 T30728_00195 T30728_01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:T30728_00061 T30728_01212 T30728_01100]
M00083 Fatty acid biosynthesis, elongation [PATH:T30728_00061 T30728_01212 T30728_01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:T30728_00061 T30728_00071 T30728_01212 T30728_01100]
M00087 beta-Oxidation [PATH:T30728_00071 T30728_01212 T30728_01100]

Sterol biosynthesis
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH:T30728_00140 T30728_01100]

Lipid metabolism
M00089 Triacylglycerol biosynthesis [PATH:T30728_00561 T30728_01100]
M00098 Acylglycerol degradation [PATH:T30728_00561 T30728_01100]
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:T30728_00564 T30728_01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:T30728_00230 T30728_01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:T30728_00230 T30728_01232 T30728_01240 T30728_01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:T30728_00230 T30728_01232 T30728_01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:T30728_00230 T30728_00240 T30728_01232 T30728_01100]
M00958 Adenine ribonucleotide degradation, AMP => Urate [PATH:T30728_00230 T30728_01232 T30728_01100]
M00959 Guanine ribonucleotide degradation, GMP => Urate [PATH:T30728_00230 T30728_01232 T30728_01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:T30728_00240 T30728_01232 T30728_01240 T30728_01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:T30728_00240 T30728_01232 T30728_01100]
M00046 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:T30728_00240 T30728_00410 T30728_00770 T30728_01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:T30728_00260 T30728_00680 T30728_01200 T30728_01230 T30728_01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:T30728_00260 T30728_01230 T30728_01100 T30728_01110]
M00621 Glycine cleavage system [PATH:T30728_00260 T30728_00630 T30728_00670 T30728_00785 T30728_01200 T30728_01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:T30728_00260 T30728_00670 T30728_01100]
M00974 Betaine metabolism, animals, betaine => glycine [PATH:T30728_00260 T30728_00670 T30728_01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:T30728_00270 T30728_00920 T30728_01320 T30728_01200 T30728_01230 T30728_01100 T30728_01110]
M00338 Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:T30728_00260 T30728_00270 T30728_00670 T30728_01230 T30728_01100]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:T30728_00270 T30728_01230 T30728_01100]
M00035 Methionine degradation [PATH:T30728_00270 T30728_00670 T30728_01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:T30728_00290 T30728_00770 T30728_01210 T30728_01230 T30728_01100 T30728_01110]
M00535 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate [PATH:T30728_00290 T30728_00660 T30728_01210 T30728_01230 T30728_01100]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:T30728_00290 T30728_01230 T30728_01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:T30728_00290 T30728_01210 T30728_01230 T30728_01100 T30728_01110]
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:T30728_00280 T30728_01100]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:T30728_00300 T30728_01230 T30728_01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:T30728_00300 T30728_01230 T30728_01100 T30728_01110]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:T30728_00220 T30728_01210 T30728_01230 T30728_01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:T30728_00220 T30728_01230 T30728_01100]
M00845 Arginine biosynthesis, glutamate => acetylcitrulline => arginine [PATH:T30728_00220 T30728_01230 T30728_01100]
M00029 Urea cycle [PATH:T30728_00220 T30728_01230 T30728_01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:T30728_00330 T30728_01230 T30728_01100]
M00970 Proline degradation, proline => glutamate [PATH:T30728_00330 T30728_01100]
M00972 Proline metabolism [PATH:T30728_00330 T30728_01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:T30728_00330 T30728_01100]
M00134 Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:T30728_00330 T30728_01100]
M00135 GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:T30728_00330 T30728_01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:T30728_00340 T30728_01230 T30728_01100 T30728_01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:T30728_00340 T30728_01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:T30728_00400 T30728_01230 T30728_01100 T30728_01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:T30728_00400 T30728_01230 T30728_01100 T30728_01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:T30728_00400 T30728_01230 T30728_01100 T30728_01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:T30728_00400 T30728_01230 T30728_01100]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:T30728_00400 T30728_01230 T30728_01100 T30728_01110]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH:T30728_00350 T30728_01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH:T30728_00380 T30728_01100]

Other amino acid metabolism
M00027 GABA (gamma-Aminobutyrate) shunt [PATH:T30728_00250 T30728_00650 T30728_01100]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:T30728_00480 T30728_01240 T30728_01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00996 UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc [PATH:T30728_00520 T30728_01250 T30728_01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:T30728_00520 T30728_01250 T30728_01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:T30728_00520 T30728_01250 T30728_01100]
M01004 UDP-Galf biosynthesis, UDP-Glc => UDP-Galf [PATH:T30728_00520 T30728_00052 T30728_01250 T30728_01100]
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH:T30728_00520 T30728_00053 T30728_01250 T30728_01100]
M00554 UDP-Gal biosynthesis, Gal => UDP-Gal [PATH:T30728_00520 T30728_00052 T30728_01250 T30728_01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:T30728_00520 T30728_00051 T30728_01250 T30728_01100]
M01015 GDP-Man biosynthesis, Man => GDP-Man [PATH:T30728_00520 T30728_00051 T30728_01250 T30728_01100]
M01009 UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc [PATH:T30728_00541 T30728_01250 T30728_01100]
M01011 CMP-Leg5Ac7Ac biosynthesis, UDP-BacNAc4NAc => CMP-Leg5Ac7Ac [PATH:T30728_00541 T30728_01250 T30728_01100]
M00063 CMP-KDO biosynthesis, ribulose-5P => CMP-KDO [PATH:T30728_00541 T30728_01250 T30728_01100]
M01014 UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA [PATH:T30728_00541 T30728_01250 T30728_01100]
M00064 ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep [PATH:T30728_00541 T30728_01250 T30728_01100]
M01021 UDP-L-Rha biosynthesis, UDP-Glc => UDP-L-Rha [PATH:T30728_00541 T30728_01250 T30728_01100]
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:T30728_00521 T30728_00523 T30728_00541 T30728_01250 T30728_01100 T30728_01110]
M01006 GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N [PATH:T30728_00520 T30728_00541 T30728_01250 T30728_01100]
M01016 GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc [PATH:T30728_00541 T30728_00051 T30728_01250 T30728_01100]

Glycan biosynthesis
M00073 N-glycan precursor trimming [PATH:T30728_00510 T30728_01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH:T30728_00601 T30728_01100]

Glycosaminoglycan metabolism
M00058 Glycosaminoglycan biosynthesis, chondroitin sulfate backbone [PATH:T30728_00532 T30728_01100]

Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00896 Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP [PATH:T30728_00730 T30728_01240 T30728_01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:T30728_00730 T30728_01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:T30728_00740 T30728_01240 T30728_01100 T30728_01110]
M00124 Pyridoxal phosphate biosynthesis, erythrose-4P => pyridoxal-P [PATH:T30728_00750 T30728_01240 T30728_01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:T30728_00760 T30728_01240 T30728_01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:T30728_00380 T30728_00760 T30728_01240 T30728_01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:T30728_00770 T30728_01240 T30728_01100 T30728_01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:T30728_00770 T30728_01240 T30728_01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:T30728_00780 T30728_01240 T30728_01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:T30728_00780 T30728_01240 T30728_01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:T30728_00785 T30728_01240 T30728_01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:T30728_00790 T30728_00670 T30728_01240 T30728_01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:T30728_00790 T30728_01240 T30728_01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:T30728_00790 T30728_01100]
M00140 C1-unit interconversion, prokaryotes [PATH:T30728_00670 T30728_01240 T30728_01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:T30728_00860 T30728_01240 T30728_01100 T30728_01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:T30728_00860 T30728_01240 T30728_01100 T30728_01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:T30728_00860 T30728_01240 T30728_01100 T30728_01110]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:T30728_00130 T30728_01240 T30728_01100 T30728_01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:T30728_00900 T30728_01100 T30728_01110]

Terpenoid biosynthesis
M00097 Lycopene biosynthesis, geranylgeranyl-PP => lycopene [PATH:T30728_00906 T30728_01100 T30728_01110]
M01039 Spirilloxanthin biosynthesis, bacteria, lycopene => spirilloxanthin [PATH:T30728_00906 T30728_01100 T30728_01110]
M01045 Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin [PATH:T30728_00906 T30728_01100 T30728_01110]

Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Biosynthesis of other compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity