KEGG pathway modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:T30856_00010 T30856_01200 T30856_01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:T30856_00010 T30856_01200 T30856_01230 T30856_01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:T30856_00010 T30856_00020 T30856_01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:T30856_00010 T30856_00020 T30856_00620 T30856_00785 T30856_01200 T30856_01210 T30856_01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:T30856_00020 T30856_01200 T30856_01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:T30856_00020 T30856_01200 T30856_01210 T30856_01230 T30856_01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:T30856_00020 T30856_01200 T30856_01210 T30856_01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:T30856_00030 T30856_01200 T30856_01100 T30856_01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:T30856_00030 T30856_01200 T30856_01100 T30856_01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:T30856_00030 T30856_01200 T30856_01230 T30856_01100 T30856_01120]
M00580 Pentose phosphate pathway, archaea, fructose-6P => ribose-5P [PATH:T30856_00030 T30856_01200 T30856_01230 T30856_01100 T30856_01120]
M00005 PRPP biosynthesis, ribose-5P => PRPP [PATH:T30856_00030 T30856_00230 T30856_01200 T30856_01230 T30856_01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:T30856_00030 T30856_01200 T30856_01100 T30856_01120]

Other carbohydrate metabolism
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:T30856_00500 T30856_01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:T30856_00500 T30856_01100]
M00012 Glyoxylate cycle [PATH:T30856_00630 T30856_01200 T30856_01100 T30856_01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:T30856_00280 T30856_00630 T30856_00640 T30856_01200 T30856_01100]
M00982 Methylcitrate cycle [PATH:T30856_00640 T30856_00020 T30856_01200 T30856_01100 T30856_01120]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH:T30856_00562 T30856_01100]

Energy metabolism
Carbon fixation
M00165 Reductive pentose phosphate cycle (Calvin cycle) [PATH:T30856_00710 T30856_01200 T30856_01100 T30856_01120]
M00168 CAM (Crassulacean acid metabolism), dark [PATH:T30856_00620 T30856_00710 T30856_01200 T30856_01100 T30856_01120]
M00169 CAM (Crassulacean acid metabolism), light [PATH:T30856_00620 T30856_00710 T30856_01200 T30856_01100 T30856_01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:T30856_00430 T30856_00620 T30856_00720 T30856_01200 T30856_01100 T30856_01120]

Methane metabolism
M00345 Formaldehyde assimilation, ribulose monophosphate pathway [PATH:T30856_00030 T30856_00680 T30856_01200 T30856_01230 T30856_01100 T30856_01120]

Nitrogen metabolism
M00530 Dissimilatory nitrate reduction, nitrate => ammonia [PATH:T30856_00910 T30856_01310 T30856_01100 T30856_01120]

Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:T30856_00920 T30856_01320 T30856_01100 T30856_01120]

Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:T30856_00190 T30856_01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:T30856_00190 T30856_01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:T30856_00190 T30856_01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:T30856_00190 T30856_01100]
M00156 Cytochrome c oxidase, cbb3-type [PATH:T30856_00190 T30856_01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:T30856_00190 T30856_00195 T30856_01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:T30856_00061 T30856_01212 T30856_01100]
M00083 Fatty acid biosynthesis, elongation [PATH:T30856_00061 T30856_01212 T30856_01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:T30856_00061 T30856_00071 T30856_01212 T30856_01100]
M00087 beta-Oxidation [PATH:T30856_00071 T30856_01212 T30856_01100]

Sterol biosynthesis
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:T30856_00564 T30856_01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:T30856_00230 T30856_01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:T30856_00230 T30856_01232 T30856_01240 T30856_01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:T30856_00230 T30856_01232 T30856_01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:T30856_00230 T30856_00240 T30856_01232 T30856_01100]
M00958 Adenine ribonucleotide degradation, AMP => Urate [PATH:T30856_00230 T30856_01232 T30856_01100]
M00959 Guanine ribonucleotide degradation, GMP => Urate [PATH:T30856_00230 T30856_01232 T30856_01100]

Pyrimidine metabolism
M00051 De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:T30856_00240 T30856_01240 T30856_01100]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:T30856_00240 T30856_01232 T30856_01240 T30856_01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:T30856_00240 T30856_01232 T30856_01100]
M00046 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:T30856_00240 T30856_00410 T30856_00770 T30856_01100]
M00939 Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:T30856_00240 T30856_01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:T30856_00260 T30856_00680 T30856_01200 T30856_01230 T30856_01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:T30856_00260 T30856_01230 T30856_01100 T30856_01110]
M00621 Glycine cleavage system [PATH:T30856_00260 T30856_00630 T30856_00670 T30856_00785 T30856_01200 T30856_01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:T30856_00260 T30856_00670 T30856_01100]
M00033 Ectoine biosynthesis, aspartate => ectoine [PATH:T30856_00260 T30856_01210 T30856_01230 T30856_01100 T30856_01120]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:T30856_00270 T30856_00920 T30856_01320 T30856_01200 T30856_01230 T30856_01100 T30856_01110]
M00338 Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:T30856_00260 T30856_00270 T30856_00670 T30856_01230 T30856_01100]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:T30856_00270 T30856_01230 T30856_01100]
M00034 Methionine salvage pathway [PATH:T30856_00270 T30856_01100]
M00035 Methionine degradation [PATH:T30856_00270 T30856_00670 T30856_01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:T30856_00290 T30856_00770 T30856_01210 T30856_01230 T30856_01100 T30856_01110]
M00535 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate [PATH:T30856_00290 T30856_00660 T30856_01210 T30856_01230 T30856_01100]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:T30856_00290 T30856_01230 T30856_01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:T30856_00290 T30856_01210 T30856_01230 T30856_01100 T30856_01110]
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:T30856_00280 T30856_01100]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:T30856_00300 T30856_01230 T30856_01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:T30856_00300 T30856_01230 T30856_01100 T30856_01110]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:T30856_00220 T30856_01210 T30856_01230 T30856_01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:T30856_00220 T30856_01230 T30856_01100]
M00029 Urea cycle [PATH:T30856_00220 T30856_01230 T30856_01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:T30856_00330 T30856_01230 T30856_01100]
M00970 Proline degradation, proline => glutamate [PATH:T30856_00330 T30856_01100]
M00047 Creatine pathway [PATH:T30856_00330 T30856_00260 T30856_01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:T30856_00330 T30856_01100]
M00134 Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:T30856_00330 T30856_01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:T30856_00340 T30856_01230 T30856_01100 T30856_01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:T30856_00340 T30856_01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:T30856_00400 T30856_01230 T30856_01100 T30856_01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:T30856_00400 T30856_01230 T30856_01100 T30856_01110]

Other amino acid metabolism
M00027 GABA (gamma-Aminobutyrate) shunt [PATH:T30856_00250 T30856_00650 T30856_01100]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:T30856_00480 T30856_01240 T30856_01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00996 UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc [PATH:T30856_00520 T30856_01250 T30856_01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:T30856_00520 T30856_01250 T30856_01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:T30856_00520 T30856_01250 T30856_01100]
M01004 UDP-Galf biosynthesis, UDP-Glc => UDP-Galf [PATH:T30856_00520 T30856_00052 T30856_01250 T30856_01100]
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH:T30856_00520 T30856_00053 T30856_01250 T30856_01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:T30856_00520 T30856_00051 T30856_01250 T30856_01100]
M01015 GDP-Man biosynthesis, Man => GDP-Man [PATH:T30856_00520 T30856_00051 T30856_01250 T30856_01100]
M01036 UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA [PATH:T30856_00541 T30856_01250 T30856_01100]
M00923 UDP-L-FucNAc biosynthesis, UDP-GlcNAc => UDP-L-FucNAc [PATH:T30856_00541 T30856_01250 T30856_01100]
M01009 UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc [PATH:T30856_00541 T30856_01250 T30856_01100]
M01011 CMP-Leg5Ac7Ac biosynthesis, UDP-BacNAc4NAc => CMP-Leg5Ac7Ac [PATH:T30856_00541 T30856_01250 T30856_01100]
M00063 CMP-KDO biosynthesis, ribulose-5P => CMP-KDO [PATH:T30856_00541 T30856_01250 T30856_01100]
M00064 ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep [PATH:T30856_00541 T30856_01250 T30856_01100]
M01021 UDP-L-Rha biosynthesis, UDP-Glc => UDP-L-Rha [PATH:T30856_00541 T30856_01250 T30856_01100]
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:T30856_00521 T30856_00523 T30856_00541 T30856_01250 T30856_01100 T30856_01110]
M01006 GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N [PATH:T30856_00520 T30856_00541 T30856_01250 T30856_01100]
M01016 GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc [PATH:T30856_00541 T30856_00051 T30856_01250 T30856_01100]
M01018 GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha [PATH:T30856_00541 T30856_00051 T30856_01250 T30856_01100]

Glycan biosynthesis
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH:T30856_00601 T30856_01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH:T30856_00601 T30856_01100]

Glycosaminoglycan metabolism
M00058 Glycosaminoglycan biosynthesis, chondroitin sulfate backbone [PATH:T30856_00532 T30856_01100]
M00077 Chondroitin sulfate degradation [PATH:T30856_00531 T30856_01100]

Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:T30856_00760 T30856_01240 T30856_01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:T30856_00380 T30856_00760 T30856_01240 T30856_01100]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:T30856_00770 T30856_01240 T30856_01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:T30856_00780 T30856_01240 T30856_01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:T30856_00785 T30856_01240 T30856_01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:T30856_00790 T30856_00670 T30856_01240 T30856_01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:T30856_00790 T30856_01240 T30856_01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:T30856_00790 T30856_01100]
M00140 C1-unit interconversion, prokaryotes [PATH:T30856_00670 T30856_01240 T30856_01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:T30856_00860 T30856_01240 T30856_01100 T30856_01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:T30856_00860 T30856_01240 T30856_01100 T30856_01110]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:T30856_00130 T30856_01240 T30856_01100 T30856_01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:T30856_00900 T30856_01100 T30856_01110]

Terpenoid biosynthesis
M00097 Lycopene biosynthesis, geranylgeranyl-PP => lycopene [PATH:T30856_00906 T30856_01100 T30856_01110]
M01045 Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin [PATH:T30856_00906 T30856_01100 T30856_01110]

Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Biosynthesis of other compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation