KEGG pathway modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:T30958_00010 T30958_01200 T30958_01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:T30958_00010 T30958_01200 T30958_01230 T30958_01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:T30958_00010 T30958_00020 T30958_01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:T30958_00010 T30958_00020 T30958_00620 T30958_00785 T30958_01200 T30958_01210 T30958_01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:T30958_00020 T30958_01200 T30958_01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:T30958_00020 T30958_01200 T30958_01210 T30958_01230 T30958_01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:T30958_00020 T30958_01200 T30958_01210 T30958_01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:T30958_00030 T30958_01200 T30958_01100 T30958_01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:T30958_00030 T30958_01200 T30958_01100 T30958_01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:T30958_00030 T30958_01200 T30958_01230 T30958_01100 T30958_01120]
M00005 PRPP biosynthesis, ribose-5P => PRPP [PATH:T30958_00030 T30958_00230 T30958_01200 T30958_01230 T30958_01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:T30958_00030 T30958_01200 T30958_01100 T30958_01120]

Other carbohydrate metabolism
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:T30958_00052 T30958_01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:T30958_00500 T30958_01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:T30958_00500 T30958_01100]
M00012 Glyoxylate cycle [PATH:T30958_00630 T30958_01200 T30958_01100 T30958_01110]
M00982 Methylcitrate cycle [PATH:T30958_00640 T30958_00020 T30958_01200 T30958_01100 T30958_01120]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:T30958_00620 T30958_00710 T30958_01200 T30958_01100 T30958_01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:T30958_00430 T30958_00620 T30958_00720 T30958_01200 T30958_01100 T30958_01120]

Methane metabolism
Nitrogen metabolism
Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:T30958_00920 T30958_01320 T30958_01100 T30958_01120]

Photosynthesis
ATP synthesis
M00149 Succinate dehydrogenase, prokaryotes [PATH:T30958_00190 T30958_01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:T30958_00190 T30958_01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:T30958_00190 T30958_01100]
M00417 Cytochrome o ubiquinol oxidase [PATH:T30958_00190 T30958_01100]
M00156 Cytochrome c oxidase, cbb3-type [PATH:T30958_00190 T30958_01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:T30958_00190 T30958_00195 T30958_01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:T30958_00061 T30958_01212 T30958_01100]
M00083 Fatty acid biosynthesis, elongation [PATH:T30958_00061 T30958_01212 T30958_01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:T30958_00061 T30958_00071 T30958_01212 T30958_01100]
M00087 beta-Oxidation [PATH:T30958_00071 T30958_01212 T30958_01100]

Sterol biosynthesis
Lipid metabolism
M00098 Acylglycerol degradation [PATH:T30958_00561 T30958_01100]
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:T30958_00564 T30958_01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:T30958_00230 T30958_01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:T30958_00230 T30958_01232 T30958_01240 T30958_01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:T30958_00230 T30958_01232 T30958_01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:T30958_00230 T30958_00240 T30958_01232 T30958_01100]
M00958 Adenine ribonucleotide degradation, AMP => Urate [PATH:T30958_00230 T30958_01232 T30958_01100]
M00959 Guanine ribonucleotide degradation, GMP => Urate [PATH:T30958_00230 T30958_01232 T30958_01100]

Pyrimidine metabolism
M00051 De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:T30958_00240 T30958_01240 T30958_01100]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:T30958_00240 T30958_01232 T30958_01240 T30958_01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:T30958_00240 T30958_01232 T30958_01100]
M00939 Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:T30958_00240 T30958_01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:T30958_00260 T30958_00680 T30958_01200 T30958_01230 T30958_01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:T30958_00260 T30958_01230 T30958_01100 T30958_01110]
M00621 Glycine cleavage system [PATH:T30958_00260 T30958_00630 T30958_00670 T30958_00785 T30958_01200 T30958_01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:T30958_00260 T30958_00670 T30958_01100]
M00974 Betaine metabolism, animals, betaine => glycine [PATH:T30958_00260 T30958_00670 T30958_01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:T30958_00270 T30958_00920 T30958_01320 T30958_01200 T30958_01230 T30958_01100 T30958_01110]
M00338 Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:T30958_00260 T30958_00270 T30958_00670 T30958_01230 T30958_01100]
M00035 Methionine degradation [PATH:T30958_00270 T30958_00670 T30958_01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:T30958_00290 T30958_00770 T30958_01210 T30958_01230 T30958_01100 T30958_01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:T30958_00290 T30958_01230 T30958_01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:T30958_00290 T30958_01210 T30958_01230 T30958_01100 T30958_01110]
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:T30958_00280 T30958_01100]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:T30958_00300 T30958_01230 T30958_01100]
M00526 Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH:T30958_00300 T30958_01230 T30958_01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:T30958_00220 T30958_01210 T30958_01230 T30958_01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:T30958_00220 T30958_01230 T30958_01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:T30958_00330 T30958_01230 T30958_01100]
M00970 Proline degradation, proline => glutamate [PATH:T30958_00330 T30958_01100]
M00972 Proline metabolism [PATH:T30958_00330 T30958_01100]
M00047 Creatine pathway [PATH:T30958_00330 T30958_00260 T30958_01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:T30958_00330 T30958_01100]
M00135 GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:T30958_00330 T30958_01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:T30958_00340 T30958_01230 T30958_01100 T30958_01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:T30958_00340 T30958_01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:T30958_00400 T30958_01230 T30958_01100 T30958_01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:T30958_00400 T30958_01230 T30958_01100 T30958_01110]

Other amino acid metabolism
M00027 GABA (gamma-Aminobutyrate) shunt [PATH:T30958_00250 T30958_00650 T30958_01100]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:T30958_00480 T30958_01240 T30958_01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:T30958_00520 T30958_01250 T30958_01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:T30958_00520 T30958_01250 T30958_01100]
M01004 UDP-Galf biosynthesis, UDP-Glc => UDP-Galf [PATH:T30958_00520 T30958_00052 T30958_01250 T30958_01100]
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH:T30958_00520 T30958_00053 T30958_01250 T30958_01100]
M00554 UDP-Gal biosynthesis, Gal => UDP-Gal [PATH:T30958_00520 T30958_00052 T30958_01250 T30958_01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:T30958_00520 T30958_00051 T30958_01250 T30958_01100]
M01015 GDP-Man biosynthesis, Man => GDP-Man [PATH:T30958_00520 T30958_00051 T30958_01250 T30958_01100]
M01001 GDP-L-Fuc biosynthesis, L-Fuc => GDP-L-Fuc [PATH:T30958_00520 T30958_01250 T30958_01100]
M01036 UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA [PATH:T30958_00541 T30958_01250 T30958_01100]
M01011 CMP-Leg5Ac7Ac biosynthesis, UDP-BacNAc4NAc => CMP-Leg5Ac7Ac [PATH:T30958_00541 T30958_01250 T30958_01100]
M00063 CMP-KDO biosynthesis, ribulose-5P => CMP-KDO [PATH:T30958_00541 T30958_01250 T30958_01100]
M01014 UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA [PATH:T30958_00541 T30958_01250 T30958_01100]
M00064 ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep [PATH:T30958_00541 T30958_01250 T30958_01100]
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:T30958_00521 T30958_00523 T30958_00541 T30958_01250 T30958_01100 T30958_01110]
M01006 GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N [PATH:T30958_00520 T30958_00541 T30958_01250 T30958_01100]
M01016 GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc [PATH:T30958_00541 T30958_00051 T30958_01250 T30958_01100]
M01018 GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha [PATH:T30958_00541 T30958_00051 T30958_01250 T30958_01100]

Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:T30958_00740 T30958_01240 T30958_01100 T30958_01110]
M00124 Pyridoxal phosphate biosynthesis, erythrose-4P => pyridoxal-P [PATH:T30958_00750 T30958_01240 T30958_01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:T30958_00760 T30958_01240 T30958_01100]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:T30958_00770 T30958_01240 T30958_01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:T30958_00780 T30958_01240 T30958_01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:T30958_00780 T30958_01240 T30958_01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:T30958_00785 T30958_01240 T30958_01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:T30958_00790 T30958_00670 T30958_01240 T30958_01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:T30958_00790 T30958_01240 T30958_01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:T30958_00790 T30958_01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:T30958_00860 T30958_01240 T30958_01100 T30958_01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:T30958_00860 T30958_01240 T30958_01100 T30958_01110]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:T30958_00130 T30958_01240 T30958_01100 T30958_01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Biosynthesis of other compounds
Xenobiotics biodegradation
Aromatics degradation
M00551 Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:T30958_00362 T30958_00622 T30958_01220 T30958_01100 T30958_01120]
M00568 Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:T30958_00362 T30958_01220 T30958_01100 T30958_01120]

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity