KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:bmur00010 bmur01200 bmur01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:bmur00010 bmur01200 bmur01230 bmur01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bmur00010 bmur00020 bmur01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bmur00010 bmur00020 bmur00620 bmur00785 bmur01200 bmur01210 bmur01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:bmur00020 bmur01200 bmur01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bmur00020 bmur01200 bmur01210 bmur01230 bmur01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bmur00020 bmur01200 bmur01210 bmur01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bmur00030 bmur01200 bmur01100 bmur01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bmur00030 bmur01200 bmur01100 bmur01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bmur00030 bmur01200 bmur01230 bmur01100 bmur01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:bmur00030 bmur00230 bmur01200 bmur01230 bmur01100]

Other carbohydrate metabolism
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:bmur00040 bmur00030 bmur01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:bmur00052 bmur01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:bmur00500 bmur01100]
M00012 Glyoxylate cycle [PATH:bmur00630 bmur01200 bmur01100 bmur01110]
M00982 Methylcitrate cycle [PATH:bmur00640 bmur00020 bmur01200 bmur01100 bmur01120]

Energy metabolism
Carbon fixation
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:bmur00430 bmur00620 bmur00720 bmur01200 bmur01100 bmur01120]

Methane metabolism
Nitrogen metabolism
Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:bmur00920 bmur01320 bmur01100 bmur01120]

Photosynthesis
ATP synthesis
M00151 Cytochrome bc1 complex respiratory unit [PATH:bmur00190 bmur01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:bmur00190 bmur01100]
M00416 Cytochrome aa3-600 menaquinol oxidase [PATH:bmur00190 bmur01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:bmur00190 bmur01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:bmur00061 bmur01212 bmur01100]
M00083 Fatty acid biosynthesis, elongation [PATH:bmur00061 bmur01212 bmur01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:bmur00061 bmur00071 bmur01212 bmur01100]
M00087 beta-Oxidation [PATH:bmur00071 bmur01212 bmur01100]

Sterol biosynthesis
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:bmur00564 bmur01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:bmur00230 bmur01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:bmur00230 bmur01232 bmur01240 bmur01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:bmur00230 bmur01232 bmur01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bmur00230 bmur00240 bmur01232 bmur01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:bmur00240 bmur01232 bmur01240 bmur01100]
M00046 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:bmur00240 bmur00410 bmur00770 bmur01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:bmur00260 bmur00680 bmur01200 bmur01230 bmur01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:bmur00260 bmur01230 bmur01100 bmur01110]
M00621 Glycine cleavage system [PATH:bmur00260 bmur00630 bmur00670 bmur00785 bmur01200 bmur01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:bmur00270 bmur00920 bmur01320 bmur01200 bmur01230 bmur01100 bmur01110]
M00609 Cysteine biosynthesis, methionine => cysteine [PATH:bmur00270 bmur01230 bmur01100]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:bmur00270 bmur01230 bmur01100]
M00034 Methionine salvage pathway [PATH:bmur00270 bmur01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:bmur00290 bmur00770 bmur01210 bmur01230 bmur01100 bmur01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:bmur00290 bmur01230 bmur01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:bmur00290 bmur01210 bmur01230 bmur01100 bmur01110]

Lysine metabolism
M00525 Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:bmur00300 bmur01230 bmur01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:bmur00220 bmur01210 bmur01230 bmur01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:bmur00220 bmur01230 bmur01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:bmur00330 bmur01230 bmur01100]
M00970 Proline degradation, proline => glutamate [PATH:bmur00330 bmur01100]
M00972 Proline metabolism [PATH:bmur00330 bmur01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:bmur00330 bmur01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:bmur00340 bmur01230 bmur01100 bmur01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:bmur00340 bmur01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:bmur00400 bmur01230 bmur01100 bmur01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:bmur00400 bmur01230 bmur01100 bmur01110]

Other amino acid metabolism
Glycan metabolism
Nucleotide sugar biosynthesis
M00909 UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc [PATH:bmur00520 bmur01250 bmur01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:bmur00520 bmur01250 bmur01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:bmur00520 bmur01250 bmur01100]
M00554 UDP-Gal biosynthesis, Gal => UDP-Gal [PATH:bmur00520 bmur00052 bmur01250 bmur01100]
M00923 UDP-L-FucNAc biosynthesis, UDP-GlcNAc => UDP-L-FucNAc [PATH:bmur00541 bmur01250 bmur01100]
M01014 UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA [PATH:bmur00541]

Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:bmur00730 bmur01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:bmur00750 bmur01240 bmur01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:bmur00760 bmur01240 bmur01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:bmur00770 bmur01240 bmur01100 bmur01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:bmur00770 bmur01240 bmur01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:bmur00780 bmur01240 bmur01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:bmur00785 bmur01240 bmur01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:bmur00790 bmur00670 bmur01240 bmur01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:bmur00790 bmur01240 bmur01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:bmur00790 bmur01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:bmur00860 bmur01240 bmur01100 bmur01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:bmur00860 bmur01240 bmur01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:bmur00130 bmur01240 bmur01100 bmur01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:bmur00900 bmur01100 bmur01110]
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH:bmur00900 bmur01100 bmur01110]

Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
M00787 Bacilysin biosynthesis, prephenate => bacilysin [PATH:bmur00998 bmur01100 bmur01110]

Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:bmur01501]

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation