KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:pau00010 pau01200 pau01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:pau00010 pau01200 pau01230 pau01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pau00010 pau00020 pau01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pau00010 pau00020 pau00620 pau00785 pau01200 pau01210 pau01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:pau00020 pau01200 pau01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pau00020 pau01200 pau01210 pau01230 pau01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pau00020 pau01200 pau01210 pau01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pau00030 pau01200 pau01100 pau01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:pau00030 pau01200 pau01100 pau01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:pau00030 pau01200 pau01230 pau01100 pau01120]
M00580 Pentose phosphate pathway, archaea, fructose-6P => ribose-5P [PATH:pau00030 pau01200 pau01230 pau01100 pau01120]
M00005 PRPP biosynthesis, ribose-5P => PRPP [PATH:pau00030 pau00230 pau01200 pau01230 pau01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pau00030 pau01200 pau01100 pau01120]

Other carbohydrate metabolism
M00631 Galacturonate degradation, bacteria, galacturonate => pyruvate + glyceraldehyde-3P [PATH:pau00040 pau00030 pau01100 pau01120]
M00061 Glucuronate degradation, glucuronate => pyruvate + glyceraldehyde-3P [PATH:pau00040 pau00030 pau01100]
M00081 Pectin degradation [PATH:pau00040 pau01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:pau00052 pau01100]
M00552 Galactonate degradation, De Ley-Doudoroff pathway, galactonate => glycerate-3P [PATH:pau00052 pau01100]
M00114 Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:pau00051 pau00053 pau01240 pau01100 pau01110]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:pau00500 pau01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:pau00500 pau01100]
M00565 Trehalose biosynthesis, D-glucose-1P => trehalose [PATH:pau00500 pau01100 pau01110]
M00012 Glyoxylate cycle [PATH:pau00630 pau01200 pau01100 pau01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pau00280 pau00630 pau00640 pau01200 pau01100]
M00982 Methylcitrate cycle [PATH:pau00640 pau00020 pau01200 pau01100 pau01120]

Energy metabolism
Carbon fixation
M00165 Reductive pentose phosphate cycle (Calvin cycle) [PATH:pau00710 pau01200 pau01100 pau01120]
M00168 CAM (Crassulacean acid metabolism), dark [PATH:pau00620 pau00710 pau01200 pau01100 pau01120]
M00169 CAM (Crassulacean acid metabolism), light [PATH:pau00620 pau00710 pau01200 pau01100 pau01120]
M00172 C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:pau00620 pau00710 pau01200 pau01100 pau01120]
M00171 C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:pau00710 pau01200 pau01100 pau01120]
M00170 C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:pau00710 pau01200 pau01100 pau01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:pau00430 pau00620 pau00720 pau01200 pau01100 pau01120]

Methane metabolism
M00345 Formaldehyde assimilation, ribulose monophosphate pathway [PATH:pau00030 pau00680 pau01200 pau01230 pau01100 pau01120]

Nitrogen metabolism
M00175 Nitrogen fixation, nitrogen => ammonia [PATH:pau00910 pau01310 pau01100 pau01120]
M00531 Assimilatory nitrate reduction, nitrate => ammonia [PATH:pau00910 pau01310 pau01100 pau01120]
M00530 Dissimilatory nitrate reduction, nitrate => ammonia [PATH:pau00910 pau01310 pau01100 pau01120]
M00529 Denitrification, nitrate => nitrogen [PATH:pau00910 pau01310 pau01100 pau01120]

Sulfur metabolism
M00987 Assimilatory sulfate reduction, plants, sulfate => H2S [PATH:pau00920 pau01320 pau01100]
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:pau00920 pau01320 pau01100 pau01120]
M00991 Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway, DMSP => acetyl-CoA [PATH:pau00920 pau00640 pau01320 pau01100 pau01120]

Photosynthesis
M00597 Anoxygenic photosystem II

ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:pau00190 pau01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:pau00190 pau01100]
M00150 Fumarate reductase, prokaryotes [PATH:pau00190 pau01100]
M00148 Succinate dehydrogenase (ubiquinone) [PATH:pau00190 pau01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:pau00190 pau01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:pau00190 pau01100]
M00417 Cytochrome o ubiquinol oxidase [PATH:pau00190 pau01100]
M00416 Cytochrome aa3-600 menaquinol oxidase [PATH:pau00190 pau01100]
M00156 Cytochrome c oxidase, cbb3-type [PATH:pau00190 pau01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:pau00190 pau01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:pau00061 pau01212 pau01100]
M00083 Fatty acid biosynthesis, elongation [PATH:pau00061 pau01212 pau01100]
M00415 Fatty acid elongation in endoplasmic reticulum [PATH:pau01040 pau01212 pau01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:pau00061 pau00071 pau01212 pau01100]
M00087 beta-Oxidation [PATH:pau00071 pau01212 pau01100]

Sterol biosynthesis
M00917 Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH:pau01100 pau01110]

Lipid metabolism
M00089 Triacylglycerol biosynthesis [PATH:pau00561 pau01100]
M00098 Acylglycerol degradation [PATH:pau00561 pau01100]
M01048 Sulfoquinovosyldiacylglycerol (SQDG) biosynthesis, glucose-1P => SQDG [PATH:pau00561 pau01100]
M00091 Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:pau00564 pau01100]
M00092 Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:pau00564 pau01100]
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pau00564 pau01100]
M00094 Ceramide biosynthesis [PATH:pau00600 pau01100]
M00099 Sphingosine biosynthesis [PATH:pau00600 pau01100]
M00100 Sphingosine degradation [PATH:pau00600 pau01100]
M00113 Jasmonic acid biosynthesis [PATH:pau00592 pau01100 pau01110]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pau00230 pau01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pau00230 pau01232 pau01240 pau01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pau00230 pau01232 pau01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pau00230 pau00240 pau01232 pau01100]
M00958 Adenine ribonucleotide degradation, AMP => Urate [PATH:pau00230 pau01232 pau01100]
M00959 Guanine ribonucleotide degradation, GMP => Urate [PATH:pau00230 pau01232 pau01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pau00240 pau01232 pau01240 pau01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pau00240 pau01232 pau01100]
M00046 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pau00240 pau00410 pau00770 pau01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:pau00260 pau00680 pau01200 pau01230 pau01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pau00260 pau01230 pau01100 pau01110]
M00621 Glycine cleavage system [PATH:pau00260 pau00630 pau00670 pau00785 pau01200 pau01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:pau00260 pau00670 pau01100]
M00975 Betaine degradation, bacteria, betaine => pyruvate [PATH:pau00260 pau01100]
M00033 Ectoine biosynthesis, aspartate => ectoine [PATH:pau00260 pau01210 pau01230 pau01100 pau01120]
M00919 Ectoine degradation, ectoine => aspartate [PATH:pau00260 pau01100 pau01120]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:pau00270 pau00920 pau01320 pau01200 pau01230 pau01100 pau01110]
M00338 Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:pau00260 pau00270 pau00670 pau01230 pau01100]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:pau00270 pau01230 pau01100]
M00034 Methionine salvage pathway [PATH:pau00270 pau01100]
M00035 Methionine degradation [PATH:pau00270 pau00670 pau01100]
M00368 Ethylene biosynthesis, methionine => ethylene [PATH:pau00270 pau01100 pau01110]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pau00290 pau00770 pau01210 pau01230 pau01100 pau01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pau00290 pau01230 pau01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pau00290 pau01210 pau01230 pau01100 pau01110]
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:pau00280 pau01100]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pau00300 pau01230 pau01100]
M00525 Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:pau00300 pau01230 pau01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:pau00300 pau01230 pau01100 pau01110]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:pau00220 pau01210 pau01230 pau01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:pau00220 pau01230 pau01100]
M00978 Ornithine-ammonia cycle [PATH:pau00220 pau01100 pau01110]
M00015 Proline biosynthesis, glutamate => proline [PATH:pau00330 pau01230 pau01100]
M00970 Proline degradation, proline => glutamate [PATH:pau00330 pau01100]
M00972 Proline metabolism [PATH:pau00330 pau01100]
M00879 Arginine succinyltransferase pathway, arginine => glutamate [PATH:pau00330 pau01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:pau00330 pau01100]
M00134 Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:pau00330 pau01100]
M00135 GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:pau00330 pau01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:pau00340 pau01230 pau01100 pau01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pau00340 pau01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pau00400 pau01230 pau01100 pau01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:pau00400 pau01230 pau01100 pau01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pau00400 pau01230 pau01100 pau01110]
M00910 Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:pau00400 pau01230 pau01100 pau01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:pau00400 pau01230 pau01100]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:pau00400 pau01230 pau01100 pau01110]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH:pau00350 pau01100]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:pau00350 pau01220 pau01100 pau01120]
M00936 Melatonin biosynthesis, plants, tryptophan => serotonin => melatonin [PATH:pau00380 pau01100 pau01110]

Other amino acid metabolism
M00027 GABA (gamma-Aminobutyrate) shunt [PATH:pau00250 pau00650 pau01100]
M00369 Cyanogenic glycoside biosynthesis, tyrosine => dhurrin [PATH:pau00460 pau01100 pau01110]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:pau00480 pau01240 pau01100]
M00947 D-Arginine racemization, D-arginine => L-arginine [PATH:pau00470 pau01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00892 UDP-GlcNAc biosynthesis, eukaryotes, Fru-6P => UDP-GlcNAc [PATH:pau00520 pau01250 pau01100]
M00909 UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc [PATH:pau00520 pau01250 pau01100]
M01003 UDP-GlcNAc biosynthesis, GlcNAc => UDP-GlcNAc [PATH:pau00520 pau01250 pau01100]
M00996 UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc [PATH:pau00520 pau01250 pau01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:pau00520 pau01250 pau01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:pau00520 pau01250 pau01100]
M01004 UDP-Galf biosynthesis, UDP-Glc => UDP-Galf [PATH:pau00520 pau00052 pau01250 pau01100]
M00998 UDP-L-Ara biosynthesis, L-Ala => UDP-L-Ala [PATH:pau00520 pau01250 pau01100]
M00997 UDP-Xyl/L-Ara biosynthesis, UDP-Glc => UDP-Xyl => UDP-L-Ala [PATH:pau00520 pau01250 pau01100]
M00994 UDP-GlcA biosynthesis, myo-inositol => GlcA => UDP-GlcA [PATH:pau00562 pau00520 pau00053 pau00040 pau01250 pau01100]
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH:pau00520 pau00053 pau01250 pau01100]
M00554 UDP-Gal biosynthesis, Gal => UDP-Gal [PATH:pau00520 pau00052 pau01250 pau01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:pau00520 pau00051 pau01250 pau01100]
M01015 GDP-Man biosynthesis, Man => GDP-Man [PATH:pau00520 pau00051 pau01250 pau01100]
M01001 GDP-L-Fuc biosynthesis, L-Fuc => GDP-L-Fuc [PATH:pau00520 pau01250 pau01100]
M01036 UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA [PATH:pau00541 pau01250 pau01100]
M01009 UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc [PATH:pau00541 pau01250 pau01100]
M00063 CMP-KDO biosynthesis, ribulose-5P => CMP-KDO [PATH:pau00541 pau01250 pau01100]
M01014 UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA [PATH:pau00541 pau01250 pau01100]
M00064 ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep [PATH:pau00541 pau01250 pau01100]
M01021 UDP-L-Rha biosynthesis, UDP-Glc => UDP-L-Rha [PATH:pau00541 pau01250 pau01100]
M00761 Und-P-alpha-L-Ara4N biosynthesis, UDP-Glc => UDP-L-Ara4FN => Und-P-alpha-L-Ara4N [PATH:pau00541 pau01250 pau01100]
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:pau00521 pau00523 pau00541 pau01250 pau01100 pau01110]
M01016 GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc [PATH:pau00541 pau00051 pau01250 pau01100]
M01017 GDP-L-Col biosynthesis, GDP-Man => GDP-L-Col [PATH:pau00541 pau01250 pau01100]
M01018 GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha [PATH:pau00541 pau00051 pau01250 pau01100]

Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH:pau01100]
M00072 N-glycosylation by oligosaccharyltransferase [PATH:pau01100]
M00073 N-glycan precursor trimming [PATH:pau01100]

Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Other polysaccharide metabolism
M00888 Galactofuranan biosynthesis, decaprenyl phosphate + UDP-GlcNAc (+ dTDP-Rha/UDP-Galf) => GL-5 [PATH:pau01100]

Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00897 Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:pau00730 pau01240 pau01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:pau00730 pau01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pau00740 pau01240 pau01100 pau01110]
M00124 Pyridoxal phosphate biosynthesis, erythrose-4P => pyridoxal-P [PATH:pau00750 pau01240 pau01100]
M00916 Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:pau00750 pau01240 pau01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pau00760 pau01240 pau01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pau00770 pau01240 pau01100 pau01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:pau00770 pau01240 pau01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pau00780 pau01240 pau01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pau00780 pau01240 pau01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pau00785 pau01240 pau01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:pau00785 pau01240 pau01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:pau00785 pau01240 pau01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:pau00790 pau00670 pau01240 pau01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pau00790 pau01240 pau01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:pau00790 pau01100]
M00140 C1-unit interconversion, prokaryotes [PATH:pau00670 pau01240 pau01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pau00860 pau01240 pau01100 pau01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pau00860 pau01240 pau01100 pau01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:pau00860 pau01240 pau01100]
M00847 Heme biosynthesis, archaea, siroheme => heme [PATH:pau00860 pau01240 pau01100 pau01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pau00860 pau01240 pau01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pau00130 pau01240 pau01100 pau01110]
M00989 Ubiquinone biosynthesis, O2-independent, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pau00130 pau01240 pau01100 pau01110]
M00932 Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:pau00130 pau01240 pau01100 pau01110]
M00112 Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:pau00130 pau01240 pau01100 pau01110]
M00933 Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:pau00130 pau01240 pau01100 pau01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00095 C5 isoprenoid biosynthesis, mevalonate pathway [PATH:pau00900 pau01100 pau01110]
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:pau00900 pau01100 pau01110]
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH:pau00900 pau01100 pau01110]
M00366 C10-C20 isoprenoid biosynthesis, plants [PATH:pau00900 pau01100 pau01110]

Terpenoid biosynthesis
M00097 Lycopene biosynthesis, geranylgeranyl-PP => lycopene [PATH:pau01100 pau01110]
M01039 Spirilloxanthin biosynthesis, bacteria, lycopene => spirilloxanthin [PATH:pau01100 pau01110]
M01040 Lutein biosynthesis, plants, lycopene => lutein [PATH:pau01100 pau01110]
M01045 Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin [PATH:pau01100 pau01110]
M01046 Xanthophyll cycle [PATH:pau01100 pau01110]
M00372 Abscisic acid biosynthesis, plants, 9'-cis-neoxanthin/9-cis-violaxanthin => abscisic acid [PATH:pau01100 pau01110]
M00927 Gibberellin A12 biosynthesis, plants, GAPP => GA12 [PATH:pau01100 pau01110]
M00928 Gibberellin A4/A1 biosynthesis, plants, GA12/GA53 => GA4/GA1 [PATH:pau01100 pau01110]

Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
M00039 Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:pau01100 pau01110]
M00137 Flavanone biosynthesis, phenylalanine => naringenin [PATH:pau01100 pau01110]
M00138 Flavonoid biosynthesis, naringenin => pelargonidin [PATH:pau01100 pau01110]
M00953 Mugineic acid biosynthesis, methionine => 3-epihydroxymugineic acid [PATH:pau00999 pau01100 pau01110]

Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
M00835 Pyocyanine biosynthesis, chorismate => pyocyanine [PATH:pau00405 pau01100 pau01110]
M00918 Aerobactin biosynthesis, lysine => aerobactin [PATH:pau01100 pau01110]

Biosynthesis of other compounds
Xenobiotics biodegradation
Aromatics degradation
M00551 Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:pau00362 pau00622 pau01220 pau01100 pau01120]
M00637 Anthranilate degradation, anthranilate => catechol [PATH:pau00627 pau01100 pau01120]
M00568 Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:pau00362 pau01220 pau01100 pau01120]
M00545 Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA [PATH:pau00360 pau01220 pau01100 pau01120]

Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:pau01501]
M00745 Imipenem resistance, repression of porin OprD
M00718 Multidrug resistance, efflux pump MexAB-OprM
M00639 Multidrug resistance, efflux pump MexCD-OprJ
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
M00643 Multidrug resistance, efflux pump MexXY-OprM
M00769 Multidrug resistance, efflux pump MexPQ-OpmE

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation