KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00002 Glycolysis, core module involving three-carbon compounds [PATH:pmp00010 pmp01200 pmp01230 pmp01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmp00010 pmp00020 pmp01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmp00010 pmp00020 pmp00620 pmp01200 pmp01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmp00020 pmp01200 pmp01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmp00020 pmp01200 pmp01210 pmp01230 pmp01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmp00020 pmp01200 pmp01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pmp00030 pmp01200 pmp01100 pmp01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pmp00030 pmp01200 pmp01100 pmp01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pmp00030 pmp01200 pmp01230 pmp01100 pmp01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:pmp00030 pmp00230 pmp01200 pmp01230 pmp01100]

Other carbohydrate metabolism
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:pmp00052 pmp01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:pmp00500 pmp01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:pmp00520 pmp00052 pmp01100]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:pmp00620 pmp01200 pmp01100 pmp01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:pmp00430 pmp00620 pmp01200 pmp01100 pmp01120]

Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
M00150 Fumarate reductase, prokaryotes [PATH:pmp00190]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:pmp00190]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:pmp00061 pmp01212 pmp01100]
M00083 Fatty acid biosynthesis, elongation [PATH:pmp00061 pmp01212 pmp01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:pmp00061 pmp00071 pmp01212 pmp01100]

Sterol biosynthesis
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pmp00564 pmp01100]

Nucleotide metabolism
Purine metabolism
M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH:pmp00230 pmp01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pmp00230 pmp01100]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH:pmp00230 pmp01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pmp00240 pmp01100]
M00053 Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP [PATH:pmp00240 pmp01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:pmp00260 pmp00680 pmp01200 pmp01230 pmp01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pmp00260 pmp01230 pmp01100 pmp01110]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:pmp00270 pmp00920 pmp01200 pmp01230 pmp01100 pmp01110]
M00017 Methionine biosynthesis, apartate => homoserine => methionine [PATH:pmp00270 pmp01230 pmp01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pmp00290 pmp00770 pmp01210 pmp01230 pmp01100 pmp01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pmp00290 pmp01230 pmp01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pmp00290 pmp01210 pmp01230 pmp01100 pmp01110]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pmp00300 pmp01230 pmp01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:pmp00220 pmp01210 pmp01230 pmp01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:pmp00220 pmp01230 pmp01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:pmp00330 pmp01230 pmp01100]

Polyamine biosynthesis
Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:pmp00340 pmp01230 pmp01100 pmp01110]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pmp00400 pmp01230 pmp01100 pmp01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:pmp00400 pmp01230 pmp01100 pmp01110]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:pmp00350 pmp01220 pmp01100 pmp01120]

Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
M00060 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:pmp00540 pmp01100]
M00063 CMP-KDO biosynthesis [PATH:pmp00540 pmp01100]
M00064 ADP-L-glycero-D-manno-heptose biosynthesis [PATH:pmp00540 pmp01100]

Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00125 Riboflavin biosynthesis, GTP => riboflavin/FMN/FAD [PATH:pmp00740 pmp01100 pmp01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:pmp00770 pmp01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pmp00780 pmp01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pmp00780 pmp01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:pmp00790 pmp00670 pmp01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pmp00790]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pmp00860 pmp01100 pmp01110]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone [PATH:pmp00130 pmp01100 pmp01110]
M00116 Menaquinone biosynthesis, chorismate => menaquinol [PATH:pmp00130 pmp01100 pmp01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Other terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
beta-Lactam biosynthesis
Biosynthesis of other secondary metabolites
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity