KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: psi00010 psi01200 psi01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: psi00010 psi01200 psi01230 psi01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: psi00010 psi00020 psi01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: psi00010 psi00020 psi00620 psi00785 psi01200 psi01210 psi01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: psi00020 psi01200 psi01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: psi00020 psi01200 psi01210 psi01230 psi01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: psi00020 psi01200 psi01210 psi01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: psi00030 psi01200 psi01100 psi01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: psi00030 psi01200 psi01100 psi01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: psi00030 psi01200 psi01230 psi01100 psi01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: psi00030 psi00230 psi01200 psi01230 psi01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: psi00030 psi01200 psi01100 psi01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: psi00040 psi01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH: psi00040 psi00030 psi01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: psi00052 psi01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: psi00052 psi01100]
M00129 Ascorbate biosynthesis, animals, glucose-1P => ascorbate [PATH: psi00040 psi00053 psi01240 psi01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: psi00500 psi01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: psi00500 psi01100]
M00012 Glyoxylate cycle [PATH: psi00630 psi01200 psi01100 psi01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: psi00280 psi00630 psi00640 psi01200 psi01100]
M00982 Methylcitrate cycle [PATH: psi00640 psi00020 psi01200 psi01100 psi01120]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: psi00562 psi01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: psi00562 psi01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: psi00562 psi01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: psi01100]
M00103 Cholecalciferol biosynthesis [PATH: psi01100]
M00106 Conjugated bile acid biosynthesis, cholate => taurocholate/glycocholate [PATH: psi01100]
M00862 beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH: psi01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: psi01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: psi01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: psi01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: psi01100]
M00977 C19-Steroid hormone biosynthesis (androgen backdoor pathway), pregnenolone => androsterone => dihydrotestosterone [PATH: psi01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: psi00400 psi01230 psi01100 psi01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: psi00400 psi01230 psi01100 psi01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: psi00400 psi01230 psi01100 psi01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH: psi00400 psi01230 psi01100]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH: psi00400 psi01230 psi01100 psi01110]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: psi00350 psi01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: psi00350 psi01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: psi00350 psi01100]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH: psi00350 psi01220 psi01100 psi01120]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: psi00380 psi01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: psi00380 psi01100]
Other amino acid metabolism
Glycan metabolism
Nucleotide sugar biosynthesis
M00892 UDP-GlcNAc biosynthesis, eukaryotes, Fru-6P => UDP-GlcNAc [PATH: psi00520 psi01250 psi01100]
M00909 UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc [PATH: psi00520 psi01250 psi01100]
M01003 UDP-GlcNAc biosynthesis, GlcNAc => UDP-GlcNAc [PATH: psi00520 psi01250 psi01100]
M00996 UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc [PATH: psi00520 psi01250 psi01100 psi01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH: psi00520 psi01250 psi01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH: psi00520 psi01250 psi01100]
M01004 UDP-Galf biosynthesis, UDP-Glc => UDP-Galf [PATH: psi00520 psi00052 psi01250 psi01100]
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH: psi00520 psi00053 psi01250 psi01100]
M00554 UDP-Gal biosynthesis, Gal => UDP-Gal [PATH: psi00520 psi00052 psi01250 psi01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH: psi00520 psi01250 psi01100]
M01001 GDP-L-Fuc biosynthesis, L-Fuc => GDP-L-Fuc [PATH: psi00520 psi01250 psi01100]
M00923 UDP-L-FucNAc biosynthesis, UDP-GlcNAc => UDP-L-FucNAc [PATH: psi00541 psi01250 psi01100]
M01009 UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc [PATH: psi00541]
M00063 CMP-3-deoxy-D-manno-octulosonate biosynthesis, ribulose-5P => CMP-KDO [PATH: psi00541 psi01250 psi01100]
M00955 CMP-Neu5Ac/Neu5Gc biosynthesis, animals, UDP-GlcNAc => CMP-Neu5Ac => CMP-Neu5Gc [PATH: psi00541 psi01250 psi01100]
M01014 UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA [PATH: psi00541]
M01028 GDP-DDmanHep biosynthesis, sedoheptulose-7P => GDP-DDmanHep [PATH: psi00541]
M00064 ADP-L-glycero-D-manno-heptose biosynthesis, sedoheptulose-7P => ADP-LDmanHep [PATH: psi00541 psi01250 psi01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH: psi00541 psi01100]
M00793 dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha [PATH: psi00521 psi00523 psi00541 psi01250 psi01100 psi01110]
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: psi01100]
M00072 N-glycosylation by oligosaccharyltransferase [PATH: psi01100]
M00073 N-glycan precursor trimming [PATH: psi01100]
M00075 N-glycan biosynthesis, complex type [PATH: psi01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: psi01100]
M00065 GPI-anchor biosynthesis, core oligosaccharide [PATH: psi01100]
M00983 GPI-anchor remodeling [PATH: psi01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: psi01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: psi01100]
M00068 Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH: psi01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: psi01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: psi00730 psi01240 psi01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: psi00730 psi01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: psi00740 psi01240 psi01100 psi01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: psi00750 psi01240 psi01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH: psi00750 psi01240 psi01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH: psi00760 psi01240 psi01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH: psi00380 psi00760 psi01240 psi01100]
M00622 Nicotinate degradation, nicotinate => fumarate [PATH: psi00760 psi01100 psi01120]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: psi00770 psi01240 psi01100 psi01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: psi00770 psi01240 psi01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: psi00780 psi01240 psi01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: psi00780 psi01240 psi01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: psi00785 psi01240 psi01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH: psi00785 psi01240 psi01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH: psi00785 psi01240 psi01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: psi00790 psi00670 psi01240 psi01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH: psi00790 psi01240 psi01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH: psi00790 psi01240 psi01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH: psi00790 psi01100]
M00140 C1-unit interconversion, prokaryotes [PATH: psi00670 psi01240 psi01100]
M00141 C1-unit interconversion, eukaryotes [PATH: psi00670 psi01240 psi01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: psi00860 psi01240 psi01100 psi01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH: psi00860 psi01240 psi01100 psi01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: psi00860 psi01240 psi01100 psi01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH: psi00860 psi01240 psi01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH: psi00860 psi01240 psi01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: psi00130 psi01240 psi01100 psi01110]
M00989 Ubiquinone biosynthesis, O2-independent, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: psi00130 psi01240 psi01100 psi01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinone [PATH: psi00130 psi01240 psi01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: psi00130 psi01240 psi01100 psi01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00745 Imipenem resistance, repression of porin OprD
M00639 Multidrug resistance, efflux pump MexCD-OprJ
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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