KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:ssh00010 ssh01200 ssh01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:ssh00010 ssh01200 ssh01230 ssh01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ssh00010 ssh00020 ssh01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ssh00010 ssh00020 ssh00620 ssh00785 ssh01200 ssh01210 ssh01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:ssh00020 ssh01200 ssh01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ssh00020 ssh01200 ssh01210 ssh01230 ssh01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ssh00020 ssh01200 ssh01210 ssh01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ssh00030 ssh01200 ssh01100 ssh01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ssh00030 ssh01200 ssh01100 ssh01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ssh00030 ssh01200 ssh01230 ssh01100 ssh01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:ssh00030 ssh01200 ssh01230 ssh01100 ssh01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:ssh00030 ssh00230 ssh01200 ssh01230 ssh01100]
M00633 Semi-phosphorylative Entner-Doudoroff pathway, gluconate/galactonate => glycerate-3P [PATH:ssh00030 ssh00052 ssh01200 ssh01100]
M00309 Non-phosphorylative Entner-Doudoroff pathway, gluconate/galactonate => glycerate [PATH:ssh00030 ssh00052 ssh01200 ssh01100 ssh01120]

Other carbohydrate metabolism
M00012 Glyoxylate cycle [PATH:ssh00630 ssh01200 ssh01100 ssh01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:ssh00280 ssh00630 ssh00640 ssh01200 ssh01100]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:ssh00620 ssh00710 ssh01200 ssh01100 ssh01120]
M00375 Hydroxypropionate-hydroxybutylate cycle [PATH:ssh00720 ssh01200 ssh01100 ssh01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:ssh00430 ssh00620 ssh00720 ssh01200 ssh01100 ssh01120]

Methane metabolism
M00345 Formaldehyde assimilation, ribulose monophosphate pathway [PATH:ssh00030 ssh00680 ssh01200 ssh01230 ssh01100 ssh01120]

Nitrogen metabolism
Sulfur metabolism
M00986 Sulfur reduction, sulfur => sulfide [PATH:ssh00920 ssh01320 ssh01100 ssh01120]

Photosynthesis
ATP synthesis
M00149 Succinate dehydrogenase, prokaryotes [PATH:ssh00190 ssh01100]
M00416 Cytochrome aa3-600 menaquinol oxidase [PATH:ssh00190 ssh01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:ssh00190 ssh01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:ssh00061 ssh01212 ssh01100]
M00083 Fatty acid biosynthesis, elongation [PATH:ssh00061 ssh01212 ssh01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:ssh00061 ssh00071 ssh01212 ssh01100]

Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:ssh00230 ssh01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:ssh00230 ssh01232 ssh01240 ssh01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:ssh00230 ssh01232 ssh01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:ssh00230 ssh00240 ssh01232 ssh01100]

Pyrimidine metabolism
M00051 De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:ssh00240 ssh01240 ssh01100]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ssh00240 ssh01232 ssh01240 ssh01100]

Amino acid metabolism
Serine and threonine metabolism
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:ssh00260 ssh01230 ssh01100 ssh01110]
M00621 Glycine cleavage system [PATH:ssh00260 ssh00630 ssh00670 ssh00785 ssh01200 ssh01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:ssh00260 ssh00670 ssh01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:ssh00270 ssh00920 ssh01320 ssh01200 ssh01230 ssh01100 ssh01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:ssh00270 ssh01230 ssh01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:ssh00290 ssh00770 ssh01210 ssh01230 ssh01100 ssh01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:ssh00290 ssh01230 ssh01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:ssh00290 ssh01210 ssh01230 ssh01100 ssh01110]

Lysine metabolism
M00031 Lysine biosynthesis, mediated by LysW, 2-aminoadipate => lysine [PATH:ssh00300 ssh01210 ssh01230 ssh01100]

Arginine and proline metabolism
M00763 Ornithine biosynthesis, mediated by LysW, glutamate => ornithine [PATH:ssh00220 ssh01210 ssh01230 ssh01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:ssh00220 ssh01230 ssh01100]
M00970 Proline degradation, proline => glutamate [PATH:ssh00330 ssh01100]
M00972 Proline metabolism [PATH:ssh00330 ssh01100]

Polyamine biosynthesis
Histidine metabolism
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:ssh00340 ssh01100]

Aromatic amino acid metabolism
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:ssh00400 ssh01230 ssh01100 ssh01110]

Other amino acid metabolism
M00949 Staphylopine biosynthesis, L-histidine => staphylopine [PATH:ssh00470 ssh01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00909 UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc [PATH:ssh00520 ssh01250 ssh01100]
M01002 UDP-GalNAc biosynthesis, Fru-6P => UDP-GalNAc [PATH:ssh00520 ssh01250 ssh01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:ssh00520 ssh01250 ssh01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:ssh00520 ssh01250 ssh01100]
M00923 UDP-L-FucNAc biosynthesis, UDP-GlcNAc => UDP-L-FucNAc [PATH:ssh00541 ssh01250 ssh01100]
M01014 UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA [PATH:ssh00541]
M00793 dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha [PATH:ssh00521 ssh00541 ssh01250 ssh01100 ssh01110]

Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00896 Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP [PATH:ssh00730 ssh01240 ssh01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:ssh00730 ssh01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:ssh00740 ssh01240 ssh01100 ssh01110]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:ssh00750 ssh01240 ssh01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:ssh00770 ssh01240 ssh01100 ssh01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:ssh00770 ssh01240 ssh01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:ssh00780 ssh01240 ssh01100]
M00577 Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin [PATH:ssh00780 ssh01240 ssh01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:ssh00785 ssh01240 ssh01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:ssh00790 ssh00670 ssh01240 ssh01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:ssh00790 ssh01240 ssh01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:ssh00790 ssh01100]
M00140 C1-unit interconversion, prokaryotes [PATH:ssh00670 ssh01240 ssh01100]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:ssh00860 ssh01240 ssh01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:ssh00130 ssh01240 ssh01100 ssh01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00095 C5 isoprenoid biosynthesis, mevalonate pathway [PATH:ssh00900 ssh01100 ssh01110]
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH:ssh00900 ssh01100 ssh01110]
M00365 C10-C20 isoprenoid biosynthesis, archaea [PATH:ssh00900 ssh01100 ssh01110]

Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
M00876 Staphyloferrin A biosynthesis, L-ornithine => staphyloferrin A [PATH:ssh00997 ssh01100 ssh01110]
M00875 Staphyloferrin B biosynthesis, L-serine => staphyloferrin B [PATH:ssh00997 ssh01100 ssh01110]

Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
M00704 Tetracycline resistance, efflux pump Tet38
M00725 Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [PATH:ssh01503]
M00726 Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [PATH:ssh01503]
M00730 Cationic antimicrobial peptide (CAMP) resistance, VraFG transporter [PATH:ssh01503]
M00700 Multidrug resistance, efflux pump AbcA
M00702 Multidrug resistance, efflux pump NorB
M00705 Multidrug resistance, efflux pump MepA

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity