KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:tmz00010 tmz01200 tmz01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:tmz00010 tmz01200 tmz01230 tmz01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tmz00010 tmz00020 tmz01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tmz00010 tmz00020 tmz00620 tmz00785 tmz01200 tmz01210 tmz01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:tmz00020 tmz01200 tmz01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tmz00020 tmz01200 tmz01210 tmz01230 tmz01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tmz00020 tmz01200 tmz01210 tmz01100]
M00005 PRPP biosynthesis, ribose-5P => PRPP [PATH:tmz00030 tmz00230 tmz01200 tmz01230 tmz01100]

Other carbohydrate metabolism
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:tmz00500 tmz01100]
M00012 Glyoxylate cycle [PATH:tmz00630 tmz01200 tmz01100 tmz01110]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:tmz00620 tmz00710 tmz01200 tmz01100 tmz01120]
M00169 CAM (Crassulacean acid metabolism), light [PATH:tmz00620 tmz00710 tmz01200 tmz01100 tmz01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:tmz00430 tmz00620 tmz00720 tmz01200 tmz01100 tmz01120]

Methane metabolism
Nitrogen metabolism
M00531 Assimilatory nitrate reduction, nitrate => ammonia [PATH:tmz00910 tmz01310 tmz01100 tmz01120]
M00529 Denitrification, nitrate => nitrogen [PATH:tmz00910 tmz01310 tmz01100 tmz01120]

Sulfur metabolism
M00985 Sulfide oxidation, sulfide => sulfur [PATH:tmz00920 tmz01320 tmz01100 tmz01120]

Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:tmz00190 tmz01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:tmz00190 tmz01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:tmz00190 tmz01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:tmz00190 tmz01100]
M00156 Cytochrome c oxidase, cbb3-type [PATH:tmz00190 tmz01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:tmz00190 tmz01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:tmz00061 tmz01212 tmz01100]
M00083 Fatty acid biosynthesis, elongation [PATH:tmz00061 tmz01212 tmz01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:tmz00061 tmz00071 tmz01212 tmz01100]
M00087 beta-Oxidation [PATH:tmz00071 tmz01212 tmz01100]

Sterol biosynthesis
Lipid metabolism
M00091 Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:tmz00564 tmz01100]
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:tmz00564 tmz01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:tmz00230 tmz01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:tmz00230 tmz01232 tmz01240 tmz01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:tmz00230 tmz01232 tmz01100]
M00958 Adenine ribonucleotide degradation, AMP => Urate [PATH:tmz00230 tmz01232 tmz01100]
M00959 Guanine ribonucleotide degradation, GMP => Urate [PATH:tmz00230 tmz01232 tmz01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:tmz00240 tmz01232 tmz01240 tmz01100]

Amino acid metabolism
Serine and threonine metabolism
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:tmz00260 tmz01230 tmz01100 tmz01110]
M00621 Glycine cleavage system [PATH:tmz00260 tmz00630 tmz00670 tmz00785 tmz01200 tmz01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:tmz00270 tmz00920 tmz01320 tmz01200 tmz01230 tmz01100 tmz01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:tmz00270 tmz01230 tmz01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:tmz00290 tmz00770 tmz01210 tmz01230 tmz01100 tmz01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:tmz00290 tmz01230 tmz01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:tmz00290 tmz01210 tmz01230 tmz01100 tmz01110]
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:tmz00280 tmz01100]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:tmz00300 tmz01230 tmz01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:tmz00220 tmz01210 tmz01230 tmz01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:tmz00220 tmz01230 tmz01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:tmz00330 tmz01230 tmz01100]
M00970 Proline degradation, proline => glutamate [PATH:tmz00330 tmz01100]

Polyamine biosynthesis
Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:tmz00340 tmz01230 tmz01100 tmz01110]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:tmz00400 tmz01230 tmz01100 tmz01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:tmz00400 tmz01230 tmz01100 tmz01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:tmz00400 tmz01230 tmz01100 tmz01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:tmz00400 tmz01230 tmz01100]

Other amino acid metabolism
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:tmz00480 tmz01240 tmz01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00909 UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc [PATH:tmz00520 tmz01250 tmz01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:tmz00520 tmz01250 tmz01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:tmz00520 tmz01250 tmz01100]
M01004 UDP-Galf biosynthesis, UDP-Glc => UDP-Galf [PATH:tmz00520 tmz00052 tmz01250 tmz01100]
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH:tmz00520 tmz00053 tmz01250 tmz01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:tmz00520 tmz00051 tmz01250 tmz01100]
M01036 UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA [PATH:tmz00541 tmz01250 tmz01100]
M00923 UDP-L-FucNAc biosynthesis, UDP-GlcNAc => UDP-L-FucNAc [PATH:tmz00541 tmz01250 tmz01100]
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:tmz00521 tmz00523 tmz00541 tmz01250 tmz01100 tmz01110]

Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:tmz00760 tmz01240 tmz01100]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:tmz00770 tmz01240 tmz01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:tmz00785 tmz01240 tmz01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:tmz00790 tmz01240 tmz01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:tmz00790 tmz01100]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:tmz00860 tmz01240 tmz01100 tmz01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:tmz00860 tmz01240 tmz01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:tmz00130 tmz01240 tmz01100 tmz01110]
M00989 Ubiquinone biosynthesis, O2-independent, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:tmz00130 tmz01240 tmz01100 tmz01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Biosynthesis of other compounds
Xenobiotics biodegradation
Aromatics degradation
M00548 Benzene degradation, benzene => catechol [PATH:tmz00361 tmz00362 tmz01220 tmz01100 tmz01120]
M00551 Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:tmz00362 tmz00622 tmz01220 tmz01100 tmz01120]
M00569 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA [PATH:tmz00362 tmz00622 tmz01220 tmz01100 tmz01120]
M00541 Benzoyl-CoA degradation, benzoyl-CoA => 3-hydroxypimeloyl-CoA [PATH:tmz00362 tmz01220 tmz01100 tmz01120]

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation