KEGG   PATHWAY: bfw03018
Entry
bfw03018                    Pathway                                
Name
RNA degradation - Blastomonas fulva
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bfw03018  RNA degradation
bfw03018

Other DBs
GO: 0006401
Organism
Blastomonas fulva [GN:bfw]
Gene
B5J99_11550  RNA pyrophosphohydrolase [KO:K08311] [EC:3.6.1.-]
B5J99_09625  ribonuclease E/G [KO:K08300] [EC:3.1.26.12]
B5J99_12105  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
B5J99_01780  polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
B5J99_06865  DEAD/DEAH box helicase [KO:K11927] [EC:5.6.2.7]
B5J99_14450  ribonuclease R [KO:K12573] [EC:3.1.13.1]
B5J99_10835  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
B5J99_16890  DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
B5J99_06195  transcription termination factor Rho [KO:K03628]
B5J99_13585  MBL fold hydrolase [KO:K12574] [EC:3.1.-.-]
B5J99_13645  molecular chaperone DnaK [KO:K04043]
B5J99_15040  molecular chaperone GroEL [KO:K04077] [EC:5.6.1.7]
B5J99_14720  RNA-binding protein hfq [KO:K03666]
B5J99_12690  RNA degradosome polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
B5J99_09360  polynucleotide adenylyltransferase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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