KEGG   PATHWAY: crg04145
Entry
crg04145                    Pathway                                
Name
Phagosome - Magallana gigas (Pacific oyster)
Description
Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
Class
Cellular Processes; Transport and catabolism
Pathway map
crg04145  Phagosome
crg04145

Other DBs
GO: 0045335
Organism
Magallana gigas (Pacific oyster) [GN:crg]
Gene
105324659  syntaxin-7 isoform X1 [KO:K13813]
105326705  actin, cytoplasmic [KO:K05692]
105332192  actin-5 [KO:K05692]
105332193  actin, cytoplasmic [KO:K05692]
105340468  actin-2 [KO:K05692]
117680327  actin-85C-like isoform X1 [KO:K05692]
105335713  actin, adductor muscle [KO:K05692]
117692766  actin-6-like [KO:K05692]
105326698  actin-like [KO:K05692]
105335284  actin-like [KO:K05692]
117684888  actin-3-like [KO:K05692]
105340471  LOW QUALITY PROTEIN: actin [KO:K05692]
117680516  actin-like [KO:K05692]
105328443  actin-1 [KO:K05692]
105328556  actin-1 [KO:K05692]
105332777  actin-5 [KO:K05692]
105332779  actin-3 [KO:K05692]
117690321  actin-3-like [KO:K05692]
105343073  syntaxin-18 [KO:K08492]
105329842  vesicle-trafficking protein SEC22b [KO:K08517]
105327336  ras-related protein Rab-5C [KO:K07888]
105348232  ras-related protein RABF2b [KO:K07888]
105325016  ras-related protein RABF1-like isoform X2 [KO:K07889]
105317406  early endosome antigen 1 isoform X1 [KO:K12478]
105334736  phosphatidylinositol 3-kinase catalytic subunit type 3 [KO:K00914] [EC:2.7.1.137]
105322897  aminopeptidase NAALADL1 isoform X1 [KO:K06503]
105333900  hepatocyte growth factor-regulated tyrosine kinase substrate-like isoform X1 [KO:K12182]
105321678  V-type proton ATPase catalytic subunit A isoform X1 [KO:K02145] [EC:7.1.2.2]
105328999  V-type proton ATPase subunit B [KO:K02147]
105319124  V-type proton ATPase subunit C 1 [KO:K02148]
105336770  V-type proton ATPase subunit D [KO:K02149]
105333395  V-type proton ATPase subunit E [KO:K02150]
117686095  V-type proton ATPase subunit E-like [KO:K02150]
105323172  V-type proton ATPase subunit F [KO:K02151]
105345691  V-type proton ATPase subunit G [KO:K02152]
105339285  V-type proton ATPase subunit e 2 [KO:K02153]
105323790  V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154]
105328823  V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154]
105318218  V-type proton ATPase subunit d [KO:K02146]
105318342  V-type proton ATPase subunit H isoform X1 [KO:K02144]
105321566  V-type proton ATPase 16 kDa proteolipid subunit [KO:K02155]
105318622  V-type proton ATPase 21 kDa proteolipid subunit [KO:K03661]
105348429  V-type proton ATPase subunit S1 [KO:K03662]
105347620  ras-related protein rab7 [KO:K07897]
105345667  cytoplasmic dynein 1 heavy chain 1 isoform X1 [KO:K10413]
105330477  cytoplasmic dynein 2 heavy chain 1 isoform X1 [KO:K10414]
105324771  cytoplasmic dynein 1 intermediate chain 2 isoform X1 [KO:K10415]
105338620  cytoplasmic dynein 1 light intermediate chain 2 isoform X1 [KO:K10416]
105329640  tubulin alpha chain, testis-specific [KO:K07374]
117683631  tubulin alpha-1A chain-like [KO:K07374]
105329346  tubulin alpha-1A chain [KO:K07374]
105329348  tubulin alpha-1A chain [KO:K07374]
109618881  tubulin alpha-1A chain-like isoform X1 [KO:K07374]
117684542  tubulin alpha chain [KO:K07374]
105347346  tubulin alpha-3 chain [KO:K07374]
105347347  tubulin alpha-1A chain [KO:K07374]
105342358  tubulin alpha-1A chain [KO:K07374]
117682163  tubulin alpha-8 chain-like isoform X1 [KO:K07374]
105331668  tubulin beta chain-like [KO:K07375]
105338583  tubulin beta chain [KO:K07375]
105343071  tubulin beta chain [KO:K07375]
117684898  tubulin beta chain-like [KO:K07375]
105330724  tubulin beta chain [KO:K07375]
105336087  lysosome-associated membrane glycoprotein 1-like [KO:K06528]
105336615  uncharacterized protein LOC105336615 [KO:K06528]
105338718  cell wall protein DAN4 [KO:K06528]
105338263  1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 [KO:K00921] [EC:2.7.1.150]
105337411  uncharacterized protein LOC105337411 [KO:K10089]
105318065  cation-dependent mannose-6-phosphate receptor [KO:K10089]
105345520  cation-dependent mannose-6-phosphate receptor [KO:K10089]
105322950  nitric oxide synthase, salivary gland isoform X2 [KO:K13240] [EC:1.14.13.39]
105333777  myeloperoxidase [KO:K10789] [EC:1.11.2.2]
117683867  peroxidasin-like [KO:K10789] [EC:1.11.2.2]
105347615  eosinophil peroxidase isoform X1 [KO:K10789] [EC:1.11.2.2]
105319077  peroxidase-like protein [KO:K10789] [EC:1.11.2.2]
105323285  cathepsin L1 [KO:K01365] [EC:3.4.22.15]
105330701  cathepsin L1 [KO:K01365] [EC:3.4.22.15]
105345949  cathepsin L1 isoform X1 [KO:K01365] [EC:3.4.22.15]
105331760  cathepsin L1 [KO:K01365] [EC:3.4.22.15]
105331761  cathepsin L1 [KO:K01365] [EC:3.4.22.15]
117686977  cathepsin L1-like [KO:K01365] [EC:3.4.22.15]
105331753  cathepsin L1 [KO:K01365] [EC:3.4.22.15]
105334651  cathepsin L1 isoform X1 [KO:K01365] [EC:3.4.22.15]
105334653  cathepsin L1 [KO:K01365] [EC:3.4.22.15]
105341596  cathepsin L1 [KO:K01365] [EC:3.4.22.15]
105317754  protein transport protein Sec61 subunit alpha [KO:K10956]
105346081  protein transport protein Sec61 subunit beta isoform X1 [KO:K09481]
105336966  Crt; calreticulin precursor [KO:K08057]
105344505  uncharacterized protein LOC105344505 precursor [KO:K08054]
117680290  calnexin-like isoform X1 [KO:K08054]
105322492  integrin beta-1-B-like precursor [KO:K05719]
105322493  integrin beta-1-B-like isoform X1 [KO:K05719]
105332751  integrin beta pat-3 isoform X1 [KO:K06493]
105342576  integrin beta-3-like isoform X1 [KO:K06493]
105328932  integrin beta-3 [KO:K06493]
117683865  integrin beta-3-like [KO:K06493]
105342575  integrin beta-3-like isoform X1 [KO:K06493]
117684088  integrin beta-3-like [KO:K06493]
117684089  integrin beta-1-like [KO:K06493]
105346726  integrin beta-6 [KO:K06493]
117683864  integrin beta-6-like isoform X1 [KO:K06588]
105334284  integrin beta-3 [KO:K06588]
105334283  integrin beta-3 isoform X1 [KO:K06588]
117684087  integrin beta pat-3-like [KO:K06588]
105335537  cartilage oligomeric matrix protein [KO:K04659]
117692251  toll-like receptor 4 [KO:K10159]
105340210  toll-like receptor 13 [KO:K10169]
105336099  toll-like receptor 4 [KO:K10160]
117683974  toll-like receptor 4 [KO:K10160]
105324721  toll-like receptor 4 [KO:K10160]
105324673  toll-like receptor 4 [KO:K10160]
117681451  toll-like receptor 4 [KO:K10160]
117681463  toll-like receptor 4 isoform X1 [KO:K10160]
105324874  macrophage mannose receptor 1 isoform X1 [KO:K06560]
105322476  macrophage mannose receptor 1 [KO:K06560]
105340962  uncharacterized protein LOC105340962 [KO:K06560]
105338853  macrophage mannose receptor 1 isoform X1 [KO:K06560]
105344080  macrophage mannose receptor 1 [KO:K06560]
105320260  perlucin-like protein [KO:K06563]
105327483  perlucin-like protein isoform X1 [KO:K06563]
117687969  CD209 antigen-like protein E [KO:K06563]
105332896  C-type lectin domain family 12 member B-like [KO:K06563]
109618594  lysyl oxidase homolog 2-like [KO:K06558]
105319934  collagen alpha-1(II) chain isoform X1 [KO:K13884]
105349006  scavenger receptor class B member 1 [KO:K13885]
105319138  cytochrome b-245 light chain isoform X1 [KO:K08009]
105319325  cytochrome b-245 heavy chain-like [KO:K21421] [EC:1.-.-.-]
105317565  rho-related protein racD [KO:K04392]
105321031  ras-related C3 botulinum toxin substrate 1 [KO:K04392]
105322710  rac-like GTP-binding protein ARAC7 [KO:K04392]
105328475  cdc42 homolog [KO:K04392]
105328476  rac-like GTP-binding protein 2 [KO:K04392]
105328483  cdc42 homolog [KO:K04392]
105333108  cdc42 homolog [KO:K04392]
117684397  ras-related C3 botulinum toxin substrate 1-like [KO:K04392]
105344224  ras-related C3 botulinum toxin substrate 2 isoform X2 [KO:K04392]
105317564  rho-related protein racD [KO:K04392]
117689129  rho-related protein racD-like [KO:K04392]
117689131  rho-related protein racD-like [KO:K04392]
105348235  uncharacterized protein LOC105348235 [KO:K08010]
Compound
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Stuart LM, Ezekowitz RA
  Title
Phagocytosis: elegant complexity.
  Journal
Immunity 22:539-50 (2005)
DOI:10.1016/j.immuni.2005.05.002
Reference
  Authors
Tjelle TE, Lovdal T, Berg T
  Title
Phagosome dynamics and function.
  Journal
Reference
  Authors
Dupuy AG, Caron E
  Title
Integrin-dependent phagocytosis: spreading from microadhesion to new concepts.
  Journal
J Cell Sci 121:1773-83 (2008)
DOI:10.1242/jcs.018036
Reference
  Authors
Brumell JH, Grinstein S
  Title
Salmonella redirects phagosomal maturation.
  Journal
Curr Opin Microbiol 7:78-84 (2004)
DOI:10.1016/j.mib.2003.12.005
Reference
  Authors
Huynh KK, Eskelinen EL, Scott CC, Malevanets A, Saftig P, Grinstein S
  Title
LAMP proteins are required for fusion of lysosomes with phagosomes.
  Journal
EMBO J 26:313-24 (2007)
DOI:10.1038/sj.emboj.7601511
Reference
  Authors
Luzio JP, Pryor PR, Bright NA
  Title
Lysosomes: fusion and function.
  Journal
Nat Rev Mol Cell Biol 8:622-32 (2007)
DOI:10.1038/nrm2217
Reference
  Authors
Sumimoto H
  Title
Structure, regulation and evolution of Nox-family NADPH oxidases that produce reactive oxygen species.
  Journal
FEBS J 275:3249-77 (2008)
DOI:10.1111/j.1742-4658.2008.06488.x
Related
pathway
crg04142  Lysosome
crg04144  Endocytosis
KO pathway
ko04145   
LinkDB

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