KEGG   PATHWAY: fpg04145
Entry
fpg04145                    Pathway                                
Name
Phagosome - Falco peregrinus (peregrine falcon)
Description
Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
Class
Cellular Processes; Transport and catabolism
Pathway map
fpg04145  Phagosome
fpg04145

Other DBs
GO: 0045335
Organism
Falco peregrinus (peregrine falcon) [GN:fpg]
Gene
101916198  VAMP3; vesicle associated membrane protein 3 [KO:K13505]
101922576  STX7; syntaxin 7 [KO:K08488]
101924846  actin, cytoplasmic type 5 [KO:K05692]
101912716  ACTB; actin beta [KO:K05692]
101919774  ACTG1; actin gamma 1 [KO:K05692]
101911184  STX18; syntaxin 18 [KO:K08492]
101913220  SEC22B; SEC22 homolog B, vesicle trafficking protein [KO:K08517]
101924893  class I histocompatibility antigen, F10 alpha chain-like [KO:K06751]
101911209  Fape-DAB; class II histocompatibility antigen, B-L beta chain-like [KO:K06752]
101911566  HLA class II histocompatibility antigen, DM beta chain-like [KO:K06752]
101920105  HLA class II histocompatibility antigen, DR alpha chain-like [KO:K06752]
101922651  RAB5A; RAB5A, member RAS oncogene family [KO:K07887]
101910524  RAB5B; RAB5B, member RAS oncogene family [KO:K07888]
101918606  RAB5C; RAB5C, member RAS oncogene family [KO:K07889]
101915176  EEA1; early endosome antigen 1 [KO:K12478]
101923473  PIK3C3; phosphatidylinositol 3-kinase catalytic subunit type 3 [KO:K00914] [EC:2.7.1.137]
101918864  TFRC; transferrin receptor [KO:K06503]
101916388  HGS; hepatocyte growth factor-regulated tyrosine kinase substrate [KO:K12182]
101919463  ATP6V1A; ATPase H+ transporting V1 subunit A [KO:K02145] [EC:7.1.2.2]
101914658  V-type proton ATPase catalytic subunit A-like [KO:K02145] [EC:7.1.2.2]
101917036  ATP6V1B2; ATPase H+ transporting V1 subunit B2 [KO:K02147]
101922086  ATP6V1B1; ATPase H+ transporting V1 subunit B1 [KO:K02147]
101924029  ATP6V1C1; ATPase H+ transporting V1 subunit C1 [KO:K02148]
101916477  ATP6V1C2; ATPase H+ transporting V1 subunit C2 [KO:K02148]
101910272  ATP6V1D; ATPase H+ transporting V1 subunit D [KO:K02149]
101914050  ATP6V1E1; ATPase H+ transporting V1 subunit E1 [KO:K02150]
101921424  ATP6V1F; ATPase H+ transporting V1 subunit F [KO:K02151]
101917423  ATP6V1G3; ATPase H+ transporting V1 subunit G3 [KO:K02152]
101922581  ATP6V1G1; ATPase H+ transporting V1 subunit G1 [KO:K02152]
101917381  ATP6V0E1; ATPase H+ transporting V0 subunit e1 [KO:K02153]
101916263  V-type proton ATPase subunit e 2-like [KO:K02153]
101913873  ATP6V0A2; ATPase H+ transporting V0 subunit a2 [KO:K02154]
101921111  ATP6V0A4; ATPase H+ transporting V0 subunit a4 [KO:K02154]
101917386  ATP6V0A1; ATPase H+ transporting V0 subunit a1 [KO:K02154]
101919327  TCIRG1; T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [KO:K02154]
101920745  ATP6V0D1; ATPase H+ transporting V0 subunit d1 [KO:K02146]
101919609  ATP6V0D2; ATPase H+ transporting V0 subunit d2 [KO:K02146]
101912640  ATP6V1H; ATPase H+ transporting V1 subunit H [KO:K02144]
101912342  ATP6V0C; ATPase H+ transporting V0 subunit c [KO:K02155]
101916767  ATP6V0B; ATPase H+ transporting V0 subunit b [KO:K03661]
101919973  V-type proton ATPase subunit S1-like [KO:K03662]
101917086  RAB7A; RAB7A, member RAS oncogene family [KO:K07897]
101912193  RAB7B; RAB7B, member RAS oncogene family [KO:K07898]
101919556  RILP; Rab interacting lysosomal protein [KO:K13883]
101911012  DYNC1H1; dynein cytoplasmic 1 heavy chain 1 [KO:K10413]
101914146  DYNC2H1; dynein cytoplasmic 2 heavy chain 1 [KO:K10414]
101922455  DYNC1I1; dynein cytoplasmic 1 intermediate chain 1 [KO:K10415]
101923534  DYNC1I2; dynein cytoplasmic 1 intermediate chain 2 [KO:K10415]
101912253  DYNC1LI2; dynein cytoplasmic 1 light intermediate chain 2 [KO:K10416]
101922100  DYNC1LI1; dynein cytoplasmic 1 light intermediate chain 1 [KO:K10416]
101915456  tubulin alpha-8 chain [KO:K07374]
101923111  tubulin alpha-3 chain-like [KO:K07374]
101914680  tubulin alpha-4 chain-like [KO:K07374]
101914857  tubulin alpha-4 chain [KO:K07374]
106112377  tubulin alpha chain [KO:K07374]
101916357  tubulin alpha-1A chain [KO:K07374]
101923113  tubulin alpha-5 chain-like [KO:K07374]
101922942  tubulin alpha-5 chain [KO:K07374]
101924094  TUBA1C; tubulin alpha-3 chain [KO:K07374]
101915369  TUBB4B; tubulin beta 4B class IVb [KO:K07375]
101919929  tubulin beta-7 chain [KO:K07375]
101918064  TUBB1; tubulin beta 1 class VI [KO:K07375]
101913765  TUBB3; tubulin beta 3 class III [KO:K07375]
101914645  TUBB6; tubulin beta 6 class V [KO:K07375]
101912752  tubulin beta-2 chain-like [KO:K07375]
101912926  tubulin beta-2 chain [KO:K07375]
101923498  LAMP1; lysosomal associated membrane protein 1 [KO:K06528]
101925019  LAMP2; lysosomal associated membrane protein 2 [KO:K06528]
101923292  PIKFYVE; phosphoinositide kinase, FYVE-type zinc finger containing [KO:K00921] [EC:2.7.1.150]
101912794  M6PR; mannose-6-phosphate receptor, cation dependent [KO:K10089]
101916747  NOS1; nitric oxide synthase 1 [KO:K13240] [EC:1.14.13.39]
101914689  MPO; myeloperoxidase [KO:K10789] [EC:1.11.2.2]
101914513  EPX; eosinophil peroxidase [KO:K10789] [EC:1.11.2.2]
101914468  CTSL; cathepsin L [KO:K01365] [EC:3.4.22.15]
101912292  cathepsin L1-like [KO:K01365] [EC:3.4.22.15]
101911722  CTSS; cathepsin S [KO:K01368] [EC:3.4.22.27]
101912538  SEC61A1; Sec61 translocon alpha 1 subunit [KO:K10956]
101914707  SEC61A2; Sec61 translocon alpha 2 subunit [KO:K10956]
101912518  SEC61B; Sec61 translocon beta subunit [KO:K09481]
101924776  SEC61G; Sec61 translocon gamma subunit [KO:K07342]
101913856  CALR3; calreticulin 3 [KO:K08057]
101914105  CALR; calreticulin [KO:K08057]
101919847  CANX; calnexin [KO:K08054]
101920055  C1R; complement C1r [KO:K01330] [EC:3.4.21.41]
101919496  ITGB2; integrin subunit beta 2 [KO:K06464]
101923177  C3; complement C3 [KO:K03990]
101913722  COLEC11; collectin subfamily member 11 [KO:K10066]
101913458  COLEC12; collectin subfamily member 12 [KO:K10062]
101922569  pulmonary surfactant-associated protein A1-like [KO:K10067]
106112861  pulmonary surfactant-associated protein A-like [KO:K10067]
101920061  ITGAV; integrin subunit alpha V [KO:K06487]
101915932  ITGA2; integrin subunit alpha 2 [KO:K06481]
101923738  ITGA5; integrin subunit alpha 5 [KO:K06484]
101917395  ITGB1; integrin subunit beta 1 [KO:K05719]
101924792  ITGB3; integrin subunit beta 3 [KO:K06493]
101923809  ITGB5; integrin subunit beta 5 [KO:K06588]
101915773  THBS1; thrombospondin 1 [KO:K16857]
101923157  THBS2; thrombospondin 2 [KO:K04659]
101920098  THBS4; thrombospondin 4 [KO:K04659]
101921164  THBS3; thrombospondin 3 [KO:K04659]
101923991  COMP; cartilage oligomeric matrix protein [KO:K04659]
101923386  TLR2; toll like receptor 2 [KO:K10159]
101923563  toll-like receptor 2 type-1 [KO:K10159]
101914363  toll-like receptor 6 [KO:K10169]
101922930  TLR4; toll like receptor 4 [KO:K10160]
101921480  MRC1; macrophage mannose receptor 1 [KO:K06560]
101917081  macrophage mannose receptor 1-like [KO:K06560]
101921305  macrophage mannose receptor 1-like [KO:K06560]
101917436  macrophage mannose receptor 1-like [KO:K06560]
101917261  macrophage mannose receptor 1-like [KO:K06560]
101924502  PLA2R1; phospholipase A2 receptor 1 [KO:K06560]
101912282  MRC2; mannose receptor C type 2 [KO:K06560]
101924769  hepatic lectin-like [KO:K06563]
101923636  CLEC7A; C-type lectin domain family 7 member A [KO:K10074]
101924924  MARCO; macrophage receptor with collagenous structure [KO:K13884]
101913357  SCARB1; scavenger receptor class B member 1 [KO:K13885]
101917535  CD36; CD36 molecule [KO:K06259]
101915504  cytochrome b-245 light chain [KO:K08009]
101920108  cytochrome b-245 heavy chain [KO:K21421] [EC:1.-.-.-]
101921306  RAC1; ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) [KO:K04392]
101913107  NCF1; neutrophil cytosolic factor 1 [KO:K08011]
101916462  NCF2; neutrophil cytosolic factor 2 [KO:K08010]
101911138  NCF4; neutrophil cytosolic factor 4 [KO:K08012]
Compound
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Stuart LM, Ezekowitz RA
  Title
Phagocytosis: elegant complexity.
  Journal
Immunity 22:539-50 (2005)
DOI:10.1016/j.immuni.2005.05.002
Reference
  Authors
Tjelle TE, Lovdal T, Berg T
  Title
Phagosome dynamics and function.
  Journal
Reference
  Authors
Dupuy AG, Caron E
  Title
Integrin-dependent phagocytosis: spreading from microadhesion to new concepts.
  Journal
J Cell Sci 121:1773-83 (2008)
DOI:10.1242/jcs.018036
Reference
  Authors
Brumell JH, Grinstein S
  Title
Salmonella redirects phagosomal maturation.
  Journal
Curr Opin Microbiol 7:78-84 (2004)
DOI:10.1016/j.mib.2003.12.005
Reference
  Authors
Huynh KK, Eskelinen EL, Scott CC, Malevanets A, Saftig P, Grinstein S
  Title
LAMP proteins are required for fusion of lysosomes with phagosomes.
  Journal
EMBO J 26:313-24 (2007)
DOI:10.1038/sj.emboj.7601511
Reference
  Authors
Luzio JP, Pryor PR, Bright NA
  Title
Lysosomes: fusion and function.
  Journal
Nat Rev Mol Cell Biol 8:622-32 (2007)
DOI:10.1038/nrm2217
Reference
  Authors
Sumimoto H
  Title
Structure, regulation and evolution of Nox-family NADPH oxidases that produce reactive oxygen species.
  Journal
FEBS J 275:3249-77 (2008)
DOI:10.1111/j.1742-4658.2008.06488.x
Related
pathway
fpg04142  Lysosome
fpg04144  Endocytosis
fpg04620  Toll-like receptor signaling pathway
KO pathway
ko04145   
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