KEGG   PATHWAY: maga03018
Entry
maga03018                   Pathway                                
Name
RNA degradation - Microbulbifer agarilyticus
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
maga03018  RNA degradation
maga03018

Other DBs
GO: 0006401
Organism
Microbulbifer agarilyticus [GN:maga]
Gene
Mag101_02420  RNA pyrophosphohydrolase [KO:K08311] [EC:3.6.1.-]
Mag101_08915  ribonuclease E [KO:K08300] [EC:3.1.26.12]
Mag101_04610  ATP-dependent RNA helicase RhlB [KO:K03732] [EC:5.6.2.7]
Mag101_05440  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
Mag101_05895  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
Mag101_04025  polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
Mag101_02755  ATP-dependent RNA helicase [KO:K11927] [EC:5.6.2.7]
Mag101_01650  ribonuclease R [KO:K12573] [EC:3.1.13.1]
Mag101_04345  ATP-dependent RNA helicase [KO:K05592] [EC:5.6.2.7]
Mag101_06320  DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
Mag101_01175  transcription termination factor Rho [KO:K03628]
Mag101_03575  molecular chaperone DnaK [KO:K04043]
Mag101_11945  chaperonin GroL [KO:K04077] [EC:5.6.1.7]
Mag101_01465  RNA-binding protein Hfq [KO:K03666]
Mag101_15070  polyphosphate kinase 1 [KO:K00937] [EC:2.7.4.1]
Mag101_13650  poly(A) polymerase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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