KEGG   PATHWAY: myb04668
Entry
myb04668                    Pathway                                
Name
TNF signaling pathway - Myotis brandtii (Brandt's bat)
Description
Tumor necrosis factor (TNF), as a critical cytokine, can induce a wide range of intracellular signal pathways including apoptosis and cell survival as well as inflammation and immunity. Activated TNF is assembled to a homotrimer and binds to its receptors (TNFR1, TNFR2) resulting in the trimerization of TNFR1 or TNFR2. TNFR1 is expressed by nearly all cells and is the major receptor for TNF (also called TNF-alpha). In contrast, TNFR2 is expressed in limited cells such as CD4 and CD8 T lymphocytes, endothelial cells, microglia, oligodendrocytes, neuron subtypes, cardiac myocytes, thymocytes and human mesenchymal stem cells. It is the receptor for both TNF and LTA (also called TNF-beta). Upon binding of the ligand, TNFR mediates the association of some adaptor proteins such as TRADD or TRAF2, which in turn initiate recruitment of signal transducers. TNFR1 signaling induces activation of many genes, primarily controlled by two distinct pathways, NF-kappa B pathway and the MAPK cascade, or apoptosis and necroptosis. TNFR2 signaling activates NF-kappa B pathway including PI3K-dependent NF-kappa B pathway and JNK pathway leading to survival.
Class
Environmental Information Processing; Signal transduction
Pathway map
myb04668  TNF signaling pathway
myb04668

Other DBs
GO: 0033209
Organism
Myotis brandtii (Brandt's bat) [GN:myb]
Gene
102246703  TNF; tumor necrosis factor [KO:K03156]
102251038  TNFRSF1A; TNF receptor superfamily member 1A [KO:K03158]
102251444  BAG4; BCL2 associated athanogene 4 [KO:K09558]
102256292  ADAM17; ADAM metallopeptidase domain 17 [KO:K06059] [EC:3.4.24.86]
102239512  RHBDF1; rhomboid 5 homolog 1 [KO:K27588]
102257386  RHBDF2; rhomboid 5 homolog 2 [KO:K27588]
102252666  FRMD8; FERM domain containing 8 [KO:K23972]
102247104  TRADD; TNFRSF1A associated via death domain [KO:K03171]
102263277  TRAF2; TNF receptor associated factor 2 [KO:K03173] [EC:2.3.2.27]
102243439  TRAF5; TNF receptor associated factor 5 [KO:K09849]
102245425  RIPK1; receptor interacting serine/threonine kinase 1 [KO:K02861] [EC:2.7.11.1]
102240943  BIRC3; baculoviral IAP repeat containing 3 [KO:K16060]
102241248  BIRC2; baculoviral IAP repeat containing 2 [KO:K16060]
102254118  MAP3K7; mitogen-activated protein kinase kinase kinase 7 [KO:K04427] [EC:2.7.11.25]
102239405  TAB1; TGF-beta activated kinase 1 (MAP3K7) binding protein 1 [KO:K04403]
102248925  TAB2; TGF-beta activated kinase 1/MAP3K7 binding protein 2 [KO:K04404]
102255876  TAB3; TGF-beta activated kinase 1/MAP3K7 binding protein 3 [KO:K12793]
102244251  MAP2K4; mitogen-activated protein kinase kinase 4 [KO:K04430] [EC:2.7.12.2]
102247950  MAP2K7; mitogen-activated protein kinase kinase 7 [KO:K04431] [EC:2.7.12.2]
102259984  MAPK9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
102263026  MAPK10; mitogen-activated protein kinase 10 [KO:K04440] [EC:2.7.11.24]
102246292  MAPK8; mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
102260808  JUN; Jun proto-oncogene, AP-1 transcription factor subunit [KO:K04448]
102246307  FOS; Fos proto-oncogene, AP-1 transcription factor subunit [KO:K04379]
102245579  ITCH; itchy E3 ubiquitin protein ligase [KO:K05632] [EC:2.3.2.26]
102244844  CFLAR; CASP8 and FADD like apoptosis regulator [KO:K04724]
102259712  MAP2K3; mitogen-activated protein kinase kinase 3 [KO:K04432] [EC:2.7.12.2]
102246913  MAP2K6; mitogen-activated protein kinase kinase 6 [KO:K04433] [EC:2.7.12.2]
102254628  MAPK12; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
102248097  MAPK14; mitogen-activated protein kinase 14 [KO:K04441] [EC:2.7.11.24]
102254920  MAPK11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
106723559  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
106726084  CEBPB; CCAAT/enhancer binding protein beta [KO:K10048]
102256847  MAP3K5; mitogen-activated protein kinase kinase kinase 5 [KO:K04426] [EC:2.7.11.25]
102262247  MAP3K14; mitogen-activated protein kinase kinase kinase 14 [KO:K04466] [EC:2.7.11.25]
102252013  IKBKG; inhibitor of nuclear factor kappa B kinase subunit gamma [KO:K07210]
102261405  IKBKB; inhibitor of nuclear factor kappa B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
102261467  CHUK; conserved helix-loop-helix ubiquitous kinase [KO:K04467] [EC:2.7.11.10]
102256580  NFKBIA; NFKB inhibitor alpha [KO:K04734]
102263790  RELA; RELA proto-oncogene, NF-kB subunit [KO:K04735]
102255251  NFKB1; nuclear factor kappa B subunit 1 [KO:K02580]
102248363  MAP3K8; mitogen-activated protein kinase kinase kinase 8 [KO:K04415] [EC:2.7.11.25]
102240696  MAP2K1; mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
102255250  MAPK3; mitogen-activated protein kinase 3 [KO:K04371] [EC:2.7.11.24]
102245641  MAPK1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
102252210  RPS6KA5; ribosomal protein S6 kinase A5 [KO:K04445] [EC:2.7.11.1]
102258693  RPS6KA4; ribosomal protein S6 kinase A4 [KO:K16510] [EC:2.7.11.1]
102246867  CREB1; cAMP responsive element binding protein 1 [KO:K05870]
102258024  CREB3L4; cAMP responsive element binding protein 3 like 4 [KO:K09048]
102241829  CREB3; cAMP responsive element binding protein 3 [KO:K09048]
102244833  CREB3L1; cAMP responsive element binding protein 3 like 1 [KO:K09048]
102245296  CREB3L2; cAMP responsive element binding protein 3 like 2 [KO:K09048]
102251355  CREB3L3; cAMP responsive element binding protein 3 like 3 [KO:K09048]
102241887  ATF2; activating transcription factor 2 [KO:K04450]
102238786  ATF4; activating transcription factor 4 [KO:K04374]
102240701  CREB5; cAMP responsive element binding protein 5 [KO:K09047]
102261840  ATF6B; activating transcription factor 6 beta [KO:K09049]
102247700  RIPK3; receptor interacting serine/threonine kinase 3 [KO:K08847] [EC:2.7.11.1]
102246377  CASP8; caspase 8 [KO:K04398] [EC:3.4.22.61]
102253536  CASP10; caspase 10 [KO:K04400] [EC:3.4.22.63]
102243767  CASP7; caspase 7 [KO:K04397] [EC:3.4.22.60]
102258599  CASP3; caspase 3 [KO:K02187] [EC:3.4.22.56]
102249398  MLKL; mixed lineage kinase domain like pseudokinase [KO:K08849] [EC:2.7.11.1]
102242775  PGAM5; PGAM family member 5, mitochondrial serine/threonine protein phosphatase [KO:K15637] [EC:3.1.3.16]
102240524  DNM1L; dynamin 1 like [KO:K17065] [EC:3.6.5.5]
102247016  CYLD; CYLD lysine 63 deubiquitinase [KO:K08601] [EC:3.4.19.12]
102246972  XIAP; X-linked inhibitor of apoptosis [KO:K04725] [EC:2.3.2.27]
102258649  CCL2; C-C motif chemokine 2 [KO:K14624]
102245368  CCL5; C-C motif chemokine ligand 5 [KO:K12499]
102260179  CCL20; C-C motif chemokine ligand 20 [KO:K14625]
102242586  growth-regulated protein homolog gamma-like [KO:K05505]
102241767  growth-regulated protein homolog gamma-like [KO:K05505]
102242280  growth-regulated protein homolog gamma [KO:K05505]
102246776  CXCL6; C-X-C motif chemokine ligand 6 [KO:K05506]
102242383  CXCL10; C-X-C motif chemokine ligand 10 [KO:K12671]
102250746  CX3CL1; C-X3-C motif chemokine ligand 1 [KO:K05508]
102263365  CSF1; colony stimulating factor 1 [KO:K05453]
106726621  granulocyte-macrophage colony-stimulating factor-like [KO:K05427]
102242138  CSF2; colony stimulating factor 2 [KO:K05427]
102259838  FAS; Fas cell surface death receptor [KO:K04390]
102264072  IL18R1; interleukin 18 receptor 1 [KO:K05173]
102239114  JAG1; jagged 1 [KO:K06052]
102251576  IL1B; interleukin 1 beta [KO:K04519]
102243367  IL6; interleukin 6 [KO:K05405]
102243720  IL15; interleukin 15 [KO:K05433]
102253201  LIF; leukemia inhibitory factor [KO:K05419]
102247784  LTA; lymphotoxin alpha [KO:K05468]
102240705  BCL3; B-cell CLL/lymphoma 3 [KO:K09258]
102252296  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
102258379  TNFAIP3; TNF alpha induced protein 3 [KO:K11859] [EC:3.4.19.12]
102239036  TRAF1; TNF receptor associated factor 1 [KO:K03172]
102256360  JUNB; JunB proto-oncogene, AP-1 transcription factor subunit [KO:K09028]
102252870  stromelysin-1 [KO:K01394] [EC:3.4.24.17]
102254078  stromelysin-1-like [KO:K01394] [EC:3.4.24.17]
102260281  MMP9; matrix metallopeptidase 9 [KO:K01403] [EC:3.4.24.35]
102240202  MMP14; matrix metallopeptidase 14 [KO:K07763] [EC:3.4.24.80]
102263857  EDN1; endothelin 1 [KO:K16366]
102252136  VEGFC; vascular endothelial growth factor C [KO:K05449]
102260639  VEGFD; vascular endothelial growth factor D [KO:K05449]
102252363  NOD2; nucleotide binding oligomerization domain containing 2 [KO:K10165]
102255343  ICAM1; intercellular adhesion molecule 1 [KO:K06490]
102242715  SELE; selectin E [KO:K06494]
102250275  VCAM1; vascular cell adhesion molecule 1 [KO:K06527]
102259598  PTGS2; prostaglandin-endoperoxide synthase 2 [KO:K11987] [EC:1.14.99.1]
102258042  TNFRSF1B; TNF receptor superfamily member 1B [KO:K05141]
102260783  TRAF3; TNF receptor associated factor 3 [KO:K03174]
102260487  PIK3CB; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta [KO:K00922] [EC:2.7.1.153]
102252921  PIK3CD; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta [KO:K00922] [EC:2.7.1.153]
102239669  PIK3CA; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha [KO:K00922] [EC:2.7.1.153]
102258430  PIK3R3; phosphoinositide-3-kinase regulatory subunit 3 [KO:K02649]
102253405  PIK3R2; phosphoinositide-3-kinase regulatory subunit 2 [KO:K02649]
102242302  PIK3R1; phosphoinositide-3-kinase regulatory subunit 1 [KO:K02649]
102254864  AKT3; AKT serine/threonine kinase 3 [KO:K04456] [EC:2.7.11.1]
102254191  AKT2; AKT serine/threonine kinase 2 [KO:K04456] [EC:2.7.11.1]
102251050  AKT1; RAC-alpha serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
102243980  DAB2IP; DAB2 interacting protein [KO:K19901]
102242863  IRF1; interferon regulatory factor 1 [KO:K09444]
102261905  IFNB1; interferon beta 1 [KO:K05415]
Reference
  Authors
Chu WM
  Title
Tumor necrosis factor.
  Journal
Cancer Lett 328:222-5 (2013)
DOI:10.1016/j.canlet.2012.10.014
Reference
  Authors
Shuh M, Bohorquez H, Loss GE Jr, Cohen AJ
  Title
Tumor Necrosis Factor-alpha: Life and Death of Hepatocytes During Liver Ischemia/Reperfusion Injury.
  Journal
Ochsner J 13:119-30 (2013)
Reference
  Authors
MacEwan DJ
  Title
TNF receptor subtype signalling: differences and cellular consequences.
  Journal
Cell Signal 14:477-92 (2002)
DOI:10.1016/S0898-6568(01)00262-5
Reference
  Authors
Newton K, Dixit VM
  Title
Signaling in innate immunity and inflammation.
  Journal
Cold Spring Harb Perspect Biol 4:a006049 (2012)
DOI:10.1101/cshperspect.a006049
Reference
  Authors
Pomerantz JL, Baltimore D
  Title
NF-kappaB activation by a signaling complex containing TRAF2, TANK and TBK1, a novel IKK-related kinase.
  Journal
EMBO J 18:6694-704 (1999)
DOI:10.1093/emboj/18.23.6694
Reference
  Authors
Naude PJ, den Boer JA, Luiten PG, Eisel UL
  Title
Tumor necrosis factor receptor cross-talk.
  Journal
FEBS J 278:888-98 (2011)
DOI:10.1111/j.1742-4658.2011.08017.x
Reference
  Authors
Faustman D, Davis M
  Title
TNF receptor 2 pathway: drug target for autoimmune diseases.
  Journal
Nat Rev Drug Discov 9:482-93 (2010)
DOI:10.1038/nrd3030
Reference
  Authors
Chan FK, Shisler J, Bixby JG, Felices M, Zheng L, Appel M, Orenstein J, Moss B, Lenardo MJ
  Title
A role for tumor necrosis factor receptor-2 and receptor-interacting protein in programmed necrosis and antiviral responses.
  Journal
J Biol Chem 278:51613-21 (2003)
DOI:10.1074/jbc.M305633200
Reference
  Authors
Lee MY, Nam KH, Choi KC
  Title
iRhoms; Its Functions and Essential Roles.
  Journal
Biomol Ther (Seoul) 24:109-14 (2016)
DOI:10.4062/biomolther.2015.149
Related
pathway
myb04010  MAPK signaling pathway
myb04064  NF-kappa B signaling pathway
myb04120  Ubiquitin mediated proteolysis
myb04151  PI3K-Akt signaling pathway
myb04210  Apoptosis
KO pathway
ko04668   
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