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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:ppf03030]
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03410 Base excision repair [PATH:ppf03410]
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03420 Nucleotide excision repair [PATH:ppf03420]
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03430 Mismatch repair [PATH:ppf03430]
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03440 Homologous recombination [PATH:ppf03440]
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03450 Non-homologous end-joining [PATH:ppf03450]
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 Pput_2506 Ku family containing protein
Pput_2501 ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
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K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:ppf03000]
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03021 Transcription machinery [BR:ppf03021]
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03019 Messenger RNA biogenesis [BR:ppf03019]
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03041 Spliceosome
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03011 Ribosome [BR:ppf03011]
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03009 Ribosome biogenesis [BR:ppf03009]
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03016 Transfer RNA biogenesis [BR:ppf03016]
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03012 Translation factors [BR:ppf03012]
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03110 Chaperones and folding catalysts [BR:ppf03110]
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04131 Membrane trafficking [BR:ppf04131]
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04121 Ubiquitin system [BR:ppf04121]
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03051 Proteasome [BR:ppf03051]
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03032 DNA replication proteins [BR:ppf03032]
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03036 Chromosome and associated proteins [BR:ppf03036]
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03400 DNA repair and recombination proteins [BR:ppf03400]
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Pput_2662 methylated-DNA--protein-cysteine methyltransferase
Pput_0767 deoxyribodipyrimidine photo-lyase type I
Pput_4308 Uracil-DNA glycosylase
Pput_4687 methylpurine-DNA glycosylase (MPG)
Pput_0306 A/G-specific DNA-adenine glycosylase
Pput_1133 endonuclease III
Pput_2850 DEAD_2 domain protein
Pput_4376 8-oxo-dGTPase
Pput_2939 NUDIX hydrolase
Pput_2492 NUDIX hydrolase
Pput_5196 deoxyuridine 5'-triphosphate nucleotidohydrolase
Pput_0739 DNA-O6-methylguanine--protein-cysteine S-methyltransferase
Pput_3022 deoxyribodipyrimidine photolyase-related protein
Pput_2363 DNA-N1-methyladenine dioxygenase
Pput_0738 DNA-3-methyladenine glycosylase II
Pput_0078 DNA-3-methyladenine glycosylase I
Pput_4999 DNA-(apurinic or apyrimidinic site) lyase
Pput_3045 Exodeoxyribonuclease III
Pput_2800 Exodeoxyribonuclease III
Pput_5200 exodeoxyribonuclease III Xth
Pput_4244 exonuclease RecJ
Pput_4841 DNA ligase (NAD(+))
Pput_1594 DNA ligase, NAD-dependent
Pput_0140 DNA polymerase I
Pput_0516 Excinuclease ABC subunit A
Pput_2636 excinuclease ABC, A subunit
Pput_3786 Excinuclease ABC subunit B
Pput_1766 Excinuclease ABC subunit C
Pput_5260 ATP-dependent DNA helicase UvrD
Pput_0480 DNA-directed RNA polymerase subunit beta
Pput_0481 DNA-directed RNA polymerase subunit beta'
Pput_0512 DNA-directed RNA polymerase subunit alpha
Pput_5210 DNA-directed RNA polymerase subunit omega
Pput_3594 transcription-repair coupling factor
Pput_4152 DNA mismatch repair protein MutS
Pput_4772 DNA mismatch repair protein MutL
Pput_4359 Exodeoxyribonuclease I subunit C
Pput_1067 Exodeoxyribonuclease VII large subunit
Pput_0563 Exodeoxyribonuclease VII small subunit
Pput_4171 DNA polymerase III, alpha subunit
Pput_0002 DNA polymerase III, beta subunit
Pput_1017 DNA polymerase III, chi subunit
Pput_4671 DNA polymerase III, delta subunit
Pput_3794 DNA polymerase III, delta prime subunit
Pput_4643 DNA polymerase III, epsilon subunit
Pput_1724 DNA polymerase III, epsilon subunit
Pput_0379 DNA polymerase III, epsilon subunit
Pput_1599 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
Pput_0518 single-strand binding protein
Pput_2920 single-strand binding protein/Primosomal replication protein n
Pput_4136 single-strand binding protein
Pput_4537 DNA helicase/exodeoxyribonuclease V, beta subunit
Pput_4538 DNA helicase/exodeoxyribonuclease V, gamma subunit
Pput_4536 DNA helicase/exodeoxyribonuclease V, alpha subunit
Pput_4088 RecA protein
Pput_1245 Holliday junction DNA helicase subunit RuvA
Pput_1246 Holliday junction DNA helicase subunit RuvB
Pput_1244 Holliday junction endonuclease RuvC
Pput_4961 replication restart DNA helicase PriA
Pput_3718 SMC domain protein
Pput_3717 Exodeoxyribonuclease I subunit D
Pput_4506 DNA replication and repair protein RadA
Pput_0003 DNA replication and repair protein RecF
Pput_5219 ATP-dependent DNA helicase RecG
Pput_4286 DNA replication and repair protein RecO
Pput_1601 DNA replication and repair protein RecR
Pput_4595 DNA replication and repair protein RecN
Pput_4018 putative exonuclease, RdgC
Pput_4351 protein of unknown function DUF853, NPT hydrolase putative
Pput_2506 Ku family containing protein
Pput_2501 ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
Pput_3947 DNA gyrase subunit A
Pput_0004 DNA gyrase subunit B
Pput_3603 DNA topoisomerase I
Pput_1939 DNA topoisomerase
Pput_5222 bacterial nucleoid protein HU alpha subunit
Pput_3466 bacterial nucleoid protein HU beta subunit
Pput_1013 histone family protein DNA-binding protein
Pput_4696 DNA-binding protein Fis
Pput_3219 integration host factor, alpha subunit
Pput_3941 integration host factor, beta subunit
Pput_1395 ATP-dependent DNA helicase RecQ
Pput_1232 DNA-directed DNA polymerase
Pput_5030 DNA-directed DNA polymerase
Pput_2950 DNA-directed DNA polymerase
Pput_2951 putative prophage repressor
Pput_5031 putative prophage repressor
Pput_2601 SOS-response transcriptional repressor, LexA
Pput_3599 SOS-response transcriptional repressor, LexA
Pput_3302 DNA damage-inducible DNA polymerase II
Pput_2600 hypothetical protein
Pput_2599 hypothetical protein
Pput_2598 error-prone DNA polymerase, DnaE-like protein
Pput_4087 regulatory protein RecX
Pput_5174 ATP-dependent DNA helicase Rep
Pput_1161 helicase c2
Pput_1102 ATP dependent helicase, Lhr family
Pput_1143 DEAD/H associated domain protein
Pput_1210 ribonucleoside-diphosphate reductase, alpha subunit
Pput_1209 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:ppf03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Pseudomonas putida F1