GFIT result for
pdi
|
GFIT result for
pdi
|
| [Motif] [Align] [N-J Tree] [Dendrogram] [Gene Cluster] |
| pdi:BDI_2994 (170 a.a.) |
-- |
putative RNA polymerase ECF-type sigma factor | |||||||
| DBHit(Length) | Over- lap | Ident. (%) | Score | Para- log | Cont. | KO | Orth | Current Annotation | |
|---|---|---|---|---|---|---|---|---|---|
| > parc:CI960_21140(170) | 170 | 100.0 | 1106 | 22 | <> | RNA polymerase sigma factor | |||
| > pfai:NXY11_21350(170) | 165 | 70.9 | 784 | 35 | <> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > pmer:INE87_02634(172) | 165 | 70.9 | 783 | 20 | <> | K03088 | rpoE | sigV; RNA polymerase sigma factor SigV; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > pjo:LK449_16555(172) | 165 | 69.1 | 778 | 14 | <> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > bsal:K6V25_10825(171) | 165 | 53.3 | 585 | 12 | -> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > tfo:BFO_0919(162) | 163 | 49.1 | 581 | 2 | <> | K03088 | rpoE | Sigma-70 region 2; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > bcel:BcellWH2_04645(171) | 167 | 53.9 | 574 | 11 | -> | sigJ; ECF RNA polymerase sigma factor SigJ | |||
| > bhl:Bache_1709(168) | 165 | 53.3 | 573 | 10 | -> | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > bfb:VU15_05295(171) | 167 | 53.9 | 572 | 18 | -> | RNA polymerase sigma70 factor | |||
| > bis:DXK01_012545(171) | 169 | 53.3 | 572 | 8 | -> | RNA polymerase sigma factor | |||
| > bfg:BF638R_1243(171) | 167 | 53.3 | 568 | 18 | -> | K03088 | rpoE | putative RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > bfr:BF1211(171) | 167 | 53.3 | 568 | 17 | -> | K03088 | rpoE | putative RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > bfs:BF9343_1119(171) | 167 | 53.3 | 568 | 18 | -> | putative RNA polymerase ECF-type sigma factor | |||
| > bdh:GV66_03605(170) | 164 | 52.4 | 565 | 10 | <> | RNA polymerase sigma70 factor | |||
| > bdo:EL88_23120(170) | 164 | 52.4 | 565 | 11 | <> | RNA polymerase sigma70 factor | |||
| > bvu:BVU_0772(170) | 163 | 53.4 | 558 | 11 | -> | putative RNA polymerase ECF-type sigma factor | |||
| > bhum:JXR92_015880(171) | 168 | 50.0 | 548 | 4 | -> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > bun:Bun01g_33660(171) | 168 | 50.0 | 546 | 8 | -> | K03088 | rpoE | DNA-directed RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > bfe:K6V30_04160(170) | 163 | 49.7 | 539 | 6 | <> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > dys:G7050_05890(167) | 161 | 46.6 | 526 | 3 | <> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > dyh:G7051_06155(?) | 161 | 46.6 | 525 | 0 | -- | - | |||
| > dcn:MUK70_02740(172) | 167 | 41.9 | 470 | 14 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > soq:LQ777_13610(172) | 169 | 39.6 | 458 | 11 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > spib:G8759_18090(172) | 167 | 41.3 | 457 | 16 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > dfq:NFI81_02065(172) | 167 | 41.3 | 456 | 12 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > dyc:NFI80_09665(172) | 170 | 40.6 | 455 | 10 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > dpf:ON006_14660(?) | 167 | 40.7 | 454 | 0 | -- | - | |||
| > senf:GJR95_00940(?) | 167 | 40.7 | 453 | 0 | -- | - | |||
| > sfol:H3H32_09550(?) | 167 | 41.3 | 452 | 0 | -- | - | |||
| > nib:GU926_10880(169) | 166 | 44.0 | 451 | 10 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > dsn:HWI92_09530(172) | 168 | 42.9 | 449 | 10 | -- | RNA polymerase sigma factor | |||
| > sli:Slin_3339(172) | 167 | 39.5 | 449 | 16 | -- | K03088 | rpoE | ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > spik:EXU85_18040(172) | 167 | 41.9 | 447 | 15 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > rti:DC20_09210(169) | 165 | 41.8 | 441 | 7 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > rud:TH61_05035(169) | 165 | 43.0 | 438 | 5 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > tpel:P0M28_28020(?) | 170 | 42.4 | 433 | 0 | -- | - | |||
| > fae:FAES_4716(182) | 161 | 41.0 | 431 | 17 | -- | K03088 | rpoE | RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > pscj:J4856_05550(169) | 164 | 40.2 | 431 | 4 | <> | RNA polymerase sigma factor | |||
| > pmuc:ING2E5A_0123(168) | 165 | 39.4 | 430 | 6 | <> | RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:KDS52101,1} | |||
| > fib:A6C57_21260(172) | 161 | 41.0 | 429 | 17 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > pbuc:LK429_05255(170) | 170 | 42.4 | 429 | 1 | <> | sigma-70 family RNA polymerase sigma factor | |||
| > pmz:HMPREF0659_A5061(169) | 164 | 39.6 | 424 | 2 | <> | Sigma-70 region 2 | |||
| > srd:SD10_07035(172) | 167 | 38.9 | 424 | 8 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > emz:MB380_19115(?) | 168 | 39.9 | 419 | 0 | -- | - | |||
| > pfus:ADJ77_06105(169) | 170 | 38.2 | 417 | 4 | <> | RNA polymerase subunit sigma-70 | |||
| > rup:DTQ70_22835(172) | 165 | 38.8 | 417 | 7 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > fbt:D770_13750(176) | 169 | 40.2 | 415 | 7 | -- | ECF subfamily RNA polymerase sigma-24 subunit | |||
| > pet:PEIBARAKI_4122(168) | 165 | 38.2 | 415 | 7 | <- | Hypothetical protein | |||
| > add:HUW48_19080(170) | 167 | 41.3 | 409 | 10 | -- | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > kan:IMCC3317_00690(169) | 165 | 40.0 | 409 | 5 | -- | K03088 | rpoE | sigW_1; ECF RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > mlt:VC82_55(169) | 165 | 37.0 | 408 | 4 | -- | K03088 | rpoE | RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > osp:Odosp_2242(164) | 158 | 40.5 | 408 | 16 | -- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > mcos:GM418_18525(196) | 165 | 41.8 | 406 | 59 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > phg:KCTC32516_02065(?) | 170 | 38.2 | 406 | 0 | -- | - | |||
| > tmp:F9Y86_14920(169) | 170 | 38.2 | 406 | 1 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > csac:SIO70_17060(?) | 170 | 35.3 | 405 | 0 | -- | - | |||
| > ddb:E7747_06155(?) | 166 | 38.0 | 405 | 0 | -- | - | |||
| > mare:EJ994_03465(169) | 165 | 37.6 | 405 | 4 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > marx:INR76_09455(168) | 165 | 39.4 | 405 | 5 | -- | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > phal:H9I45_02470(169) | 170 | 37.6 | 405 | 6 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > aswu:HUW51_14555(170) | 165 | 41.2 | 404 | 13 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > ttg:P8625_04075(?) | 170 | 38.2 | 404 | 0 | -- | - | |||
| > chrw:KA713_21120(170) | 171 | 38.6 | 403 | 13 | -- | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > pcou:L6468_02880(170) | 172 | 37.2 | 403 | 0 | -> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > rhoz:GXP67_19060(170) | 165 | 38.8 | 403 | 14 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > tmar:MARIT_1740(169) | 165 | 40.0 | 403 | 0 | -- | K03088 | rpoE | RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > marb:CJ263_17730(170) | 171 | 39.2 | 402 | 6 | -> | K03088 | rpoE | RNA polymerase subunit sigma-70; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > smis:LDL76_12830(171) | 168 | 41.7 | 402 | 2 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > tsig:D6T69_09220(?) | 170 | 38.2 | 402 | 0 | -- | - | |||
| > zga:ZOBELLIA_52(169) | 159 | 39.0 | 402 | 6 | -- | K03088 | rpoE | RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > aue:C5O00_14170(168) | 165 | 38.2 | 401 | 7 | -- | K03088 | rpoE | RNA polymerase subunit sigma-70; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > ten:LPB136_03395(169) | 165 | 38.8 | 401 | 1 | -- | K03088 | rpoE | RNA polymerase subunit sigma-70; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > tje:TJEJU_2341(169) | 170 | 37.6 | 401 | 5 | -- | K03088 | rpoE | RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > kos:KORDIASMS9_04005(169) | 165 | 38.8 | 400 | 5 | -- | K03088 | rpoE | sigH; ECF RNA polymerase sigma factor SigH; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > cagg:HYG79_00650(169) | 170 | 35.9 | 399 | 5 | -- | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > chk:D4L85_23985(166) | 169 | 39.6 | 399 | 29 | -- | RNA polymerase sigma factor | |||
| > chih:GWR21_07915(171) | 170 | 34.7 | 398 | 31 | -> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > pom:MED152_02895(169) | 170 | 36.5 | 398 | 2 | -- | K03088 | rpoE | RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > rsr:T7867_11945(?) | 170 | 41.8 | 398 | 0 | -- | - | |||
| > mart:BTR34_00290(169) | 160 | 38.1 | 397 | 1 | -> | K03088 | rpoE | RNA polymerase subunit sigma-70; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > poa:CW731_02520(169) | 170 | 37.1 | 397 | 3 | -- | K03088 | rpoE | RNA polymerase subunit sigma-70; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > fbc:FB2170_13773(159) | 160 | 37.5 | 396 | 2 | -- | K03088 | rpoE | putative RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > cfil:MYF79_22675(171) | 170 | 35.9 | 395 | 34 | -> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > pbat:JL193_01270(169) | 170 | 36.5 | 395 | 11 | -- | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > pcea:J3359_02380(169) | 170 | 37.1 | 395 | 9 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > chit:FW415_16185(172) | 170 | 34.7 | 394 | 66 | -> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > cpi:Cpin_5462(171) | 170 | 35.3 | 394 | 40 | -> | K03088 | rpoE | RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > pun:NQP51_02495(169) | 170 | 36.5 | 394 | 2 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > tov:PG911_07830(169) | 170 | 37.1 | 394 | 4 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > marm:YQ22_00295(169) | 160 | 38.8 | 393 | 3 | -> | K03088 | rpoE | RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > hhy:Halhy_0951(168) | 165 | 37.6 | 392 | 25 | -- | K03088 | rpoE | RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > prn:BW723_13785(169) | 170 | 36.5 | 392 | 5 | -- | K03088 | rpoE | RNA polymerase subunit sigma-70; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > mlio:NYZ99_10915(170) | 166 | 38.0 | 391 | 2 | -> | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > plit:K8354_06015(169) | 170 | 37.1 | 391 | 5 | -- | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > flg:LV716_14860(169) | 165 | 36.4 | 390 | 7 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > pah:Poras_0205(168) | 160 | 35.6 | 389 | 0 | -- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > pdn:HMPREF9137_0636(171) | 164 | 36.0 | 389 | 4 | <> | Sigma-70 region 2 | |||
| > pob:LPB03_02065(169) | 170 | 35.9 | 389 | 6 | -- | K03088 | rpoE | RNA polymerase subunit sigma-70; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > alut:O5O44_05860(169) | 160 | 36.9 | 388 | 0 | -> | RNA polymerase sigma factor | |||
| > chor:MKQ68_08545(171) | 170 | 32.4 | 388 | 0 | -> | K03088 | rpoE | RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |