KEGG   PATHWAY: acs03030
Entry
acs03030                    Pathway                                
Name
DNA replication - Anolis carolinensis (green anole)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
acs03030  DNA replication
acs03030

Organism
Anolis carolinensis (green anole) [GN:acs]
Gene
100552547  rnaseh1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
100553184  rpa3; replication protein A3 [KO:K10740]
100553208  pole2; DNA polymerase epsilon 2, accessory subunit [KO:K02325] [EC:2.7.7.7]
100553905  pola1; DNA polymerase alpha 1, catalytic subunit [KO:K02320] [EC:2.7.7.7]
100553924  pold2; DNA polymerase delta 2, accessory subunit [KO:K02328]
100553994  pole; DNA polymerase epsilon, catalytic subunit [KO:K02324] [EC:2.7.7.7]
100554910  rpa2; replication protein A2 [KO:K10739]
100555152  fen1; flap structure-specific endonuclease 1 [KO:K04799] [EC:3.1.-.-]
100555411  mcm5; minichromosome maintenance complex component 5 [KO:K02209] [EC:5.6.2.3]
100555447  mcm3; minichromosome maintenance complex component 3 [KO:K02541] [EC:5.6.2.3]
100555731  rfc1; replication factor C subunit 1 [KO:K10754]
100556142  rpa1; replication protein A1 [KO:K07466]
100556602  rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
100557004  mcm7; minichromosome maintenance complex component 7 [KO:K02210] [EC:5.6.2.3]
100557227  ssbp1; single stranded DNA binding protein 1 [KO:K03111]
100557735  rnaseh2b; ribonuclease H2 subunit B [KO:K10744]
100558195  pold4; DNA polymerase delta 4, accessory subunit [KO:K03505]
100558796  rfc3; replication factor C subunit 3 [KO:K10756]
100559244  prim1; primase (DNA) subunit 1 [KO:K02684] [EC:2.7.7.102]
100559358  pold3; DNA polymerase delta 3, accessory subunit [KO:K03504]
100559976  mcm2; minichromosome maintenance complex component 2 [KO:K02540] [EC:5.6.2.3]
100560817  prim2; primase (DNA) subunit 2 [KO:K02685]
100560949  pcna; proliferating cell nuclear antigen [KO:K04802]
100561657  rfc4; replication factor C subunit 4 [KO:K10755]
100562294  mcm4; minichromosome maintenance complex component 4 [KO:K02212] [EC:5.6.2.3]
100562628  rfc5; replication factor C subunit 5 [KO:K10756]
100562656  rfc2; replication factor C subunit 2 [KO:K10755]
100564729  pold1; DNA polymerase delta 1, catalytic subunit [KO:K02327] [EC:2.7.7.7]
100564995  dna2; DNA replication helicase/nuclease 2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
100565521  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
100566917  mcm6; minichromosome maintenance complex component 6 [KO:K02542] [EC:5.6.2.3]
103281575  [KO:K04799] [EC:3.1.-.-]
103281683  pola2; DNA polymerase alpha 2, accessory subunit [KO:K02321]
103282149  rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
103282741  [KO:K02321]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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