KEGG   PATHWAY: aly00195
Entry
aly00195                    Pathway                                
Name
Photosynthesis - Arabidopsis lyrata (lyrate rockcress)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
aly00195  Photosynthesis
aly00195

Module
aly_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:aly00195]
aly_M00161  Photosystem II [PATH:aly00195]
aly_M00163  Photosystem I [PATH:aly00195]
Organism
Arabidopsis lyrata (lyrate rockcress) [GN:aly]
Gene
32283147  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
32283056  psbB; photosystem II 47 kDa protein [KO:K02704]
9322951  LOW QUALITY PROTEIN: uncharacterized protein LOC9322951 [KO:K02705]
32283090  psbC; photosystem II 44 kDa protein [KO:K02705]
9324415  uncharacterized protein LOC9324415 [KO:K02705]
32283168  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
32283093  psbE; photosystem II protein V [KO:K02707]
32283100  psbF; photosystem II reaction center subunit VI [KO:K02708]
32283102  psbH; photosystem II protein H [KO:K02709]
32283099  psbI; photosystem II protein I [KO:K02710]
32283076  psbJ; photosystem II protein J [KO:K02711]
32283161  psbK; photosystem II protein K [KO:K02712]
32283097  psbL; PSII reaction center subunit XII [KO:K02713]
32283081  psbM; photosystem II protein M [KO:K02714]
9313842  oxygen-evolving enhancer protein 1-2, chloroplastic [KO:K02716]
9302826  oxygen-evolving enhancer protein 1-1, chloroplastic [KO:K02716]
9303055  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
9314098  psbP-like protein 1, chloroplastic [KO:K02717]
9315347  oxygen-evolving enhancer protein 2-1, chloroplastic [KO:K02717]
9325678  oxygen-evolving enhancer protein 2-1, chloroplastic isoform X1 [KO:K02717]
9318249  photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
9305967  oxygen-evolving enhancer protein 3-1, chloroplastic [KO:K08901]
9310903  oxygen-evolving enhancer protein 3-2, chloroplastic [KO:K08901]
9328853  photosynthetic NDH subunit of lumenal location 2, chloroplastic [KO:K08901]
9325292  photosystem II 10 kDa polypeptide, chloroplastic [KO:K03541]
9330052  photosystem II 22 kDa protein, chloroplastic [KO:K03542]
32283088  psbT; photosystem II protein T [KO:K02718]
9315336  photosystem II reaction center W protein, chloroplastic [KO:K02721]
9323206  photosystem II core complex proteins psbY, chloroplastic [KO:K02723]
32283166  psbZ; photosystem II protein Z [KO:K02724]
9328233  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
9305559  photosystem II reaction center PSB28 protein, chloroplastic [KO:K08903]
32283083  psaA; photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
32283125  psaB; photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
32283065  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
9308879  photosystem I reaction center subunit II-1, chloroplastic [KO:K02692]
9325503  photosystem I reaction center subunit II-2, chloroplastic [KO:K02692]
9305547  photosystem I reaction center subunit IV A, chloroplastic [KO:K02693]
9320003  photosystem I reaction center subunit IV B, chloroplastic [KO:K02693]
9327215  photosystem I reaction center subunit III, chloroplastic [KO:K02694]
9327911  photosystem I reaction center subunit V, chloroplastic [KO:K08905]
110230185  photosystem I reaction center subunit VI-1, chloroplastic [KO:K02695]
9330429  photosystem I reaction center subunit VI-2, chloroplastic [KO:K02695]
32283046  psaI; photosystem I subunit VIII [KO:K02696]
32283160  psaJ; photosystem I subunit IX [KO:K02697]
9329678  photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
9299285  photosystem I reaction center subunit XI, chloroplastic [KO:K02699]
9300959  photosystem I reaction center subunit N, chloroplastic [KO:K02701]
9325754  photosystem I subunit O [KO:K14332]
32283055  petA; cytochrome f [KO:K02634]
9324403  uncharacterized protein LOC9324403 [KO:K02635]
32283095  petB; cytochrome b6 [KO:K02635]
9322963  LOW QUALITY PROTEIN: uncharacterized protein LOC9322963 [KO:K02635]
9310938  cytochrome b6-f complex iron-sulfur subunit, chloroplastic [KO:K02636] [EC:7.1.1.6]
32283077  petD; cytochrome b6/f complex subunit IV [KO:K02637]
32283080  petG; cytochrome B6/F complex subunit V [KO:K02640]
32283140  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
9325121  plastocyanin minor isoform, chloroplastic [KO:K02638]
9326442  plastocyanin major isoform, chloroplastic [KO:K02638]
9304317  uncharacterized protein LOC9304317 [KO:K02639]
9325907  ferredoxin-1, chloroplastic [KO:K02639]
9327058  uncharacterized protein LOC9327058 [KO:K02639]
9322640  ferredoxin-2, chloroplastic [KO:K02639]
9315160  ferredoxin-3, chloroplastic [KO:K02639]
110224535  uncharacterized protein LOC110224535 [KO:K02639]
9308823  LOW QUALITY PROTEIN: ferredoxin--NADP reductase, root isozyme 1, chloroplastic [KO:K02641] [EC:1.18.1.2]
9329148  ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [KO:K02641] [EC:1.18.1.2]
9329690  ferredoxin--NADP reductase, root isozyme 2, chloroplastic isoform X2 [KO:K02641] [EC:1.18.1.2]
9301158  ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [KO:K02641] [EC:1.18.1.2]
9299611  cytochrome c6, chloroplastic [KO:K08906]
9299606  cytochrome c6, chloroplastic [KO:K08906]
32283157  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
32283049  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
9326183  ATP synthase gamma chain 2, chloroplastic [KO:K02115]
9310874  ATP synthase gamma chain 1, chloroplastic [KO:K02115]
32283162  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
9322934  uncharacterized protein LOC9322934 [KO:K02111] [EC:7.1.2.2 7.2.2.1]
9310651  ATP synthase subunit delta, chloroplastic [KO:K02113]
32283047  atpF; ATP synthase CF0 B subunit [KO:K02109]
9303323  ATP synthase subunit b', chloroplastic [KO:K02109]
32283050  atpH; ATP synthase CF0 C subunit [KO:K02110]
32283052  atpI; ATP synthase CF0 A subunit [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
aly00196  Photosynthesis - antenna proteins
aly00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
LinkDB

DBGET integrated database retrieval system