KEGG   PATHWAY: anan03018
Entry
anan03018                   Pathway                                
Name
RNA degradation - Aotus nancymaae (Ma's night monkey)
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
anan03018  RNA degradation
anan03018

Other DBs
GO: 0006401
Organism
Aotus nancymaae (Ma's night monkey) [GN:anan]
Gene
105704773  [KO:K13126]
105705367  CNOT7; CCR4-NOT transcription complex subunit 7 [KO:K12581]
105705642  CNOT10; CCR4-NOT transcription complex subunit 10 [KO:K12607]
105705911  LSM7; U6 snRNA-associated Sm-like protein LSm7 [KO:K12626]
105706361  LSM2; U6 snRNA-associated Sm-like protein LSm2 [KO:K12621]
105706372  SKIC2; superkiller complex protein 2 [KO:K12599] [EC:5.6.2.6]
105706526  XRN1; 5'-3' exoribonuclease 1 isoform X7 [KO:K12618] [EC:3.1.13.-]
105706583  DHX36; ATP-dependent DNA/RNA helicase DHX36 [KO:K14442] [EC:5.6.2.6]
105706745  EXOSC6; exosome complex component MTR3 [KO:K12587]
105708012  PABPC4; polyadenylate-binding protein 4 isoform X1 [KO:K13126]
105708152  EXOSC1; exosome complex component CSL4 isoform X1 [KO:K07573]
105709439  CNOT2; CCR4-NOT transcription complex subunit 2 isoform X1 [KO:K12605]
105709464  [KO:K00850] [EC:2.7.1.11]
105710492  DIS3; exosome complex exonuclease RRP44 isoform X1 [KO:K12585] [EC:3.1.13.-]
105710750  PABPC4L; polyadenylate-binding protein 4-like [KO:K13126]
105711032  LSM4; U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
105711402  [KO:K13126]
105711768  PFKL; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
105711846  BTG3; protein BTG3 isoform X1 [KO:K14443]
105712469  [KO:K12622]
105712813  CNOT9; CCR4-NOT transcription complex subunit 9 isoform X1 [KO:K12606]
105713312  CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 [KO:K12603] [EC:3.1.13.4]
105714084  CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1 [KO:K12604]
105715951  PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X3 [KO:K12571] [EC:3.1.13.4]
105716528  [KO:K16855] [EC:3.6.1.62 3.6.1.64]
105716540  PNLDC1; poly(A)-specific ribonuclease PNLDC1 isoform X1 [KO:K01148] [EC:3.1.13.4]
105716733  CNOT6; CCR4-NOT transcription complex subunit 6 isoform X2 [KO:K12603] [EC:3.1.13.4]
105717838  PARN; poly(A)-specific ribonuclease PARN isoform X1 [KO:K01148] [EC:3.1.13.4]
105718341  LSM6; U6 snRNA-associated Sm-like protein LSm6 [KO:K12625]
105718407  HSPD1; 60 kDa heat shock protein, mitochondrial [KO:K04077] [EC:5.6.1.7]
105718579  PATL1; protein PAT1 homolog 1 isoform X2 [KO:K12617]
105718714  DIS3L; DIS3-like exonuclease 1 isoform X1 [KO:K18681] [EC:3.1.13.-]
105719668  PABPC1; polyadenylate-binding protein 1 [KO:K13126]
105720006  [KO:K12624]
105720663  MTREX; exosome RNA helicase MTR4 [KO:K12598] [EC:5.6.2.6]
105720881  EDC3; enhancer of mRNA-decapping protein 3 [KO:K12615]
105720932  SKIC8; superkiller complex protein 8 [KO:K12602]
105721114  EXOSC2; exosome complex component RRP4 [KO:K03679]
105721199  [KO:K12622]
105721207  [KO:K12592]
105721881  PFKM; ATP-dependent 6-phosphofructokinase, muscle type [KO:K00850] [EC:2.7.1.11]
105721924  BTG2; protein BTG2 [KO:K14443]
105722035  [KO:K12621]
105722831  ENO3; beta-enolase isoform X2 [KO:K01689] [EC:4.2.1.11]
105722923  DCP1A; mRNA-decapping enzyme 1A [KO:K12610] [EC:3.-.-.-]
105722993  [KO:K04077] [EC:5.6.1.7]
105723371  LSM5; U6 snRNA-associated Sm-like protein LSm5 [KO:K12624]
105723388  EXOSC5; exosome complex component RRP46 isoform X1 [KO:K12590]
105724627  ZCCHC7; zinc finger CCHC domain-containing protein 7 isoform X1 [KO:K12597]
105724638  EXOSC3; exosome complex component RRP40 [KO:K03681]
105724668  XRN2; 5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
105724745  TOB1; protein Tob1 [KO:K14443]
105725048  CNOT8; CCR4-NOT transcription complex subunit 8 [KO:K12581]
105725508  PABPC5; polyadenylate-binding protein 5 [KO:K13126]
105726218  EXOSC8; exosome complex component RRP43 [KO:K12586]
105726325  CNOT4; CCR4-NOT transcription complex subunit 4 isoform X1 [KO:K10643] [EC:2.3.2.27]
105726626  MPHOSPH6; M-phase phosphoprotein 6 [KO:K12593]
105727206  PFKP; ATP-dependent 6-phosphofructokinase, platelet type isoform X2 [KO:K00850] [EC:2.7.1.11]
105727440  PABPC1L; polyadenylate-binding protein 1-like isoform X2 [KO:K13126]
105727630  [KO:K13126]
105727968  EDC4; enhancer of mRNA-decapping protein 4 isoform X3 [KO:K12616]
105728780  BTG1; protein BTG1 [KO:K14443]
105729391  DCP2; m7GpppN-mRNA hydrolase isoform X1 [KO:K12613] [EC:3.6.1.62]
105729427  DCPS; m7GpppX diphosphatase isoform X1 [KO:K12584] [EC:3.6.1.59]
105729686  DDX6; probable ATP-dependent RNA helicase DDX6 [KO:K12614] [EC:5.6.2.7]
105729699  BTG4; protein BTG4 isoform X2 [KO:K14443]
105729822  EXOSC7; exosome complex component RRP42 [KO:K12589]
105730058  PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 [KO:K12572]
105730806  TENT4B; terminal nucleotidyltransferase 4B isoform X1 [KO:K03514] [EC:2.7.7.19]
105731166  ENO2; gamma-enolase [KO:K01689] [EC:4.2.1.11]
105731345  EXOSC9; exosome complex component RRP45 [KO:K03678]
105731367  LSM3; U6 snRNA-associated Sm-like protein LSm3 [KO:K12622]
105731547  EXOSC4; exosome complex component RRP41 [KO:K11600]
105731743  ENO1; alpha-enolase [KO:K01689] [EC:4.2.1.11]
105731788  EXOSC10; exosome complex component 10 isoform X1 [KO:K12591] [EC:3.1.13.-]
105732507  CNOT3; CCR4-NOT transcription complex subunit 3 isoform X1 [KO:K12580]
105733041  TENT4A; terminal nucleotidyltransferase 4A isoform X1 [KO:K03514] [EC:2.7.7.19]
105733281  C1D; nuclear nucleic acid-binding protein C1D [KO:K12592]
105733519  LSM1; U6 snRNA-associated Sm-like protein LSm1 [KO:K12620]
105733550  HSPA9; stress-70 protein, mitochondrial [KO:K04043]
105733737  DCP1B; mRNA-decapping enzyme 1B [KO:K12611] [EC:3.-.-.-]
105733782  LSM8; LSM8 homolog, U6 small nuclear RNA associated [KO:K12627]
105733946  [KO:K03681]
105733980  TOB2; protein Tob2 [KO:K14443]
105734429  PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1 [KO:K00962] [EC:2.7.7.8]
105734684  SKIC3; superkiller complex protein 3 [KO:K12600]
110567584  [KO:K12621]
110568733  [KO:K13126]
110568781  [KO:K13126]
135273820  [KO:K13126]
135273821  [KO:K13126]
135275683  [KO:K04077] [EC:5.6.1.7]
135277719  [KO:K12572]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
anan03015  mRNA surveillance pathway
KO pathway
ko03018   

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