KEGG   PATHWAY: bgt03420
Entry
bgt03420                    Pathway                                
Name
Nucleotide excision repair - Biomphalaria glabrata (bloodfluke planorb)
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
bgt03420  Nucleotide excision repair
bgt03420

Other DBs
GO: 0006289
Organism
Biomphalaria glabrata (bloodfluke planorb) [GN:bgt]
Gene
106050560  [KO:K02324] [EC:2.7.7.7]
106051872  [KO:K23720]
106052815  [KO:K10610]
106052932  [KO:K03142]
106054066  [KO:K06634]
106055222  [KO:K03016]
106055354  [KO:K03017]
106055751  [KO:K10846]
106056176  [KO:K03143]
106056840  [KO:K02325] [EC:2.7.7.7]
106056871  [KO:K03008]
106057338  [KO:K10756]
106057429  [KO:K10140]
106057737  [KO:K04802]
106057943  [KO:K10756]
106058143  [KO:K02328]
106059198  [KO:K03015]
106059884  [KO:K10838]
106059912  [KO:K03014]
106061006  [KO:K03006] [EC:2.7.7.6]
106061173  [KO:K10847]
106061251  [KO:K10848] [EC:3.1.-.-]
106061391  [KO:K03013]
106061803  [KO:K10844] [EC:5.6.2.3]
106061886  [KO:K10841]
106062989  [KO:K02326] [EC:2.7.7.7]
106063577  [KO:K10839]
106064892  [KO:K10755]
106064979  [KO:K10570]
106065840  [KO:K21987]
106066121  [KO:K03010] [EC:2.7.7.6]
106066693  [KO:K03504]
106067113  [KO:K02326] [EC:2.7.7.7]
106067122  [KO:K10739]
106067124  [KO:K03505]
106067415  [KO:K03141]
106069540  [KO:K10609]
106070115  [KO:K03011]
106071410  [KO:K03142]
106071476  [KO:K10754]
106072025  [KO:K03144]
106072880  [KO:K10740]
106073049  [KO:K10755]
106073308  [KO:K03012]
106073353  [KO:K02327] [EC:2.7.7.7]
106073770  [KO:K10842]
106074176  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
106076424  [KO:K03008]
106077619  [KO:K07466]
106077799  [KO:K10756]
106078442  [KO:K10843] [EC:5.6.2.4]
106079618  [KO:K10849]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
bgt03020  RNA polymerase
bgt04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

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