KEGG   PATHWAY: blt00020
Entry
blt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bifidobacterium animalis subsp. lactis DSM 10140
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
blt00020  Citrate cycle (TCA cycle)
blt00020

Module
blt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:blt00020]
Other DBs
GO: 0006099
Organism
Bifidobacterium animalis subsp. lactis DSM 10140 [GN:blt]
Gene
Balat_0538  citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
Balat_1134  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Balat_0768  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Balat_0700  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Balat_0816  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Balat_0817  Succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
Balat_1068  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Balat_1069  Succinate dehydrogenase/fumarate reductase Fe-Sprotein subunit [KO:K00240] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
blt00010  Glycolysis / Gluconeogenesis
blt00053  Ascorbate and aldarate metabolism
blt00061  Fatty acid biosynthesis
blt00071  Fatty acid degradation
blt00190  Oxidative phosphorylation
blt00220  Arginine biosynthesis
blt00250  Alanine, aspartate and glutamate metabolism
blt00280  Valine, leucine and isoleucine degradation
blt00350  Tyrosine metabolism
blt00470  D-Amino acid metabolism
blt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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