KEGG   PATHWAY: bom03050
Entry
bom03050                    Pathway                                
Name
Proteasome - Bos mutus (wild yak)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bom03050  Proteasome
bom03050

Other DBs
GO: 0000502
Organism
Bos mutus (wild yak) [GN:bom]
Gene
102264958  PSMB10; proteasome subunit beta type-10 isoform X1 [KO:K02733] [EC:3.4.25.1]
102265951  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
102266173  PSMC2; 26S proteasome regulatory subunit 7 [KO:K03061]
102266745  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
102266918  PSMC4; 26S proteasome regulatory subunit 6B [KO:K03063]
102267095  IFNG; interferon gamma [KO:K04687]
102267252  PSMA8; proteasome subunit alpha-type 8 isoform X2 [KO:K02731] [EC:3.4.25.1]
102267294  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
102267720  PSME1; proteasome activator complex subunit 1 [KO:K06696]
102268542  SEM1; 26S proteasome complex subunit SEM1 [KO:K10881]
102268643  PSME2; proteasome activator complex subunit 2 [KO:K06697]
102268867  PSMA6; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
102268932  PSME4; proteasome activator complex subunit 4 [KO:K06699]
102269381  POMP; proteasome maturation protein [KO:K11599]
102270676  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 isoform X2 [KO:K03029]
102271911  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
102271943  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
102272891  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
102273025  PSMC5; 26S proteasome regulatory subunit 8 [KO:K03066]
102273312  PSMB2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
102273322  PSMB4; LOW QUALITY PROTEIN: proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
102273809  PSME3; proteasome activator complex subunit 3 [KO:K06698]
102274269  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
102277499  PSMC3; 26S proteasome regulatory subunit 6A [KO:K03065]
102277591  PSMB11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
102277881  PSMB5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
102278209  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
102278344  PSMA3; proteasome subunit alpha type-3 isoform X2 [KO:K02727] [EC:3.4.25.1]
102279603  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
102280022  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
102280502  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
102281751  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
102281977  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
102282227  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
102282779  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
102283073  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
102283566  PSMB8; proteasome subunit beta type-8 isoform X1 [KO:K02740] [EC:3.4.25.1]
102283846  PSMB9; proteasome subunit beta type-9 isoform X1 [KO:K02741] [EC:3.4.25.1]
102284281  PSMC1; 26S proteasome regulatory subunit 4 [KO:K03062]
102285347  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
102285542  PSMC6; 26S proteasome regulatory subunit 10B [KO:K03064]
102286734  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
102287415  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
102287800  ADRM1; proteasomal ubiquitin receptor ADRM1 [KO:K06691]
102287909  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 isoform X1 [KO:K03030]
102288037  PSMB6; proteasome subunit beta type-6 isoform X1 [KO:K02738] [EC:3.4.25.1]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
bom04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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