KEGG   PATHWAY: carg00020
Entry
carg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium argentinense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
carg00020  Citrate cycle (TCA cycle)
carg00020

Module
carg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:carg00020]
carg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:carg00020]
Other DBs
GO: 0006099
Organism
Clostridium argentinense [GN:carg]
Gene
RSJ17_08750  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RSJ17_04005  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RSJ17_04010  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RSJ17_04015  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
RSJ17_04000  2-oxoacid:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
RSJ17_03860  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
RSJ17_03865  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
RSJ17_09540  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
RSJ17_19505  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
RSJ17_19500  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
RSJ17_19515  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
RSJ17_19510  pyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
RSJ17_13010  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
RSJ17_16200  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
carg00010  Glycolysis / Gluconeogenesis
carg00061  Fatty acid biosynthesis
carg00071  Fatty acid degradation
carg00190  Oxidative phosphorylation
carg00220  Arginine biosynthesis
carg00250  Alanine, aspartate and glutamate metabolism
carg00280  Valine, leucine and isoleucine degradation
carg00350  Tyrosine metabolism
carg00470  D-Amino acid metabolism
carg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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